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PROSITE entry PS50159


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50159
Entry name [info] RIBOSOMAL_S13_2
Accession [info] PS50159
Entry type [info] MATRIX
Date [info] 01-FEB-2003 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00556

Name and characterization of the entry

Description [info] Ribosomal protein S13 family profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=109;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=104;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.0392000; R2=0.0149363; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3613.8107910; R2=7.5202703; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=600; H_SCORE=8126; N_SCORE=9.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=433; H_SCORE=6870; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-20; E1=-20; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 854 in 854 different sequences
Number of true positive hits 854 in 854 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
854 sequences

IHF_STRCO   (Q9KXR9), RR13_ARATH  (P42732), RR13_CYACA  (Q9TLV0), 
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PDB
[Detailed view]
1365 PDB

1FJG; 1HNW; 1HNX; 1HNZ; 1HR0; 1I94; 1I95; 1I96; 1I97; 1IBK; 1IBL; 1IBM;
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