PROSITE logo

PROSITE entry PS50151


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50151
Entry name [info] UVR
Accession [info] PS50151
Entry type [info] MATRIX
Date [info] 01-APR-2002 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50151
Associated ProRule [info] PRU00217

Name and characterization of the entry

Description [info] UVR domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=36;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=33;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.4512000; R2=0.0155257; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1579.0720215; R2=1.5585586; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=442; H_SCORE=2268; N_SCORE=8.3; MODE=1;
/CUT_OFF: LEVEL=-1; SCORE=326; H_SCORE=2087; N_SCORE=6.5; MODE=1;
/DEFAULT: M0=-7; D=-20; I=-20; B1=-60; E1=-60; MI=-105; MD=-105; IM=-105; DM=-105;
...
» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 993 in 993 different sequences
Number of true positive hits 992 in 992 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 40
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.90 %
Recall (true positives / (true positives + false negatives)) 96.12 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20_shuffled
Author [info] N_Hulo
Feature key [info] DOMAIN
Feature description [info] UVR
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
992 sequences

CLPAA_SOLLC (P31541), CLPAB_SOLLC (P31542), CLPA_BRANA  (P46523), 
» more

UniProtKB/Swiss-Prot
False negative sequences
40 sequences

BBD1_ARATH  (Q9FWS6), BBD1_ORYSI  (B8A8D2), BBD1_ORYSJ  (Q5N8J3), 
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

SYC_STRR6   (Q8DQS8)

		
PDB
[Detailed view]
26 PDB

1C4O; 1D2M; 1D9X; 1D9Z; 1E52; 1QOJ; 1T5L; 2D7D; 2FDC; 2NMV; 3J3R; 3J3S;
» more