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PROSITE entry PS50113


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50113
Entry name [info] PAC
Accession [info] PS50113
Entry type [info] MATRIX
Date [info] 01-DEC-2001 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50112
Associated ProRule [info] PRU00141

Name and characterization of the entry

Description [info] PAC domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=53;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=48;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4010999; R2=0.0265788; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=1878.3033447; R2=1.4344569; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=230; H_SCORE=2208; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=155; H_SCORE=2101; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=*; E1=*; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 149 in 120 different sequences
Number of true positive hits 149 in 120 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 107
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 58.20 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 4
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Feature key [info] DOMAIN
Feature description [info] PAC
Version [info] 7

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
120 sequences

ARCB_ECO57  (P58363), ARCB_ECOLI  (P0AEC3), ARCB_SHIFL  (P0AEC4), 
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UniProtKB/Swiss-Prot
False negative sequences
107 sequences

ADO1_ARATH  (Q94BT6), ADO2_ARATH  (Q8W420), ADO3_ARATH  (Q9C9W9), 
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PDB
[Detailed view]
152 PDB

1BYW; 1DP6; 1DP8; 1DP9; 1DRM; 1LSV; 1LSW; 1LSX; 1LT0; 1N9L; 1N9N; 1N9O;
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