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PROSITE entry PS50112


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PURL: https://purl.expasy.org/prosite/signature/PS50112

Direct ScanProsite submission
General information about the entry

Entry name [info] PAS
Accession [info] PS50112
Entry type [info] MATRIX
Date [info] 01-DEC-2001 CREATED;
07-APR-2021 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50112
Associated ProRule [info] PRU00140

Name and characterization of the entry

Description [info] PAS repeat profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=72;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=67;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.1544000; R2=0.0321907; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=2227.3801270; R2=2.8413284; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=229; H_SCORE=2878; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=167; H_SCORE=2702; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: D=-20; I=-20; B1=-40; E1=-40; MI=-105; MD=-105; IM=-105; DM=-105; MM=1; M0=-1;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 500 in 357 different sequences
Number of true positive hits 499 in 356 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 87
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.80 %
Recall (true positives / (true positives + false negatives)) 85.15 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 3
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] K_Hofmann
Feature key [info] DOMAIN
Feature description [info] PAS
Version [info] 6

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
356 sequences

ADO1_ARATH  (Q94BT6), ADO1_ORYSJ  (Q5Z8K3), ADO2_ARATH  (Q8W420), 
» more

UniProtKB/Swiss-Prot
False negative sequences
87 sequences

ACUK_CHAGB  (Q2GSA4), ACUK_FUSV7  (C7YM38), ACUK_NEUCR  (Q7RUA4), 
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

PPK18_SCHPO (Q8TFG6)

		
PDB
[Detailed view]
370 PDB

1BYW; 1D06; 1D7E; 1DP6; 1DP8; 1DP9; 1DRM; 1EW0; 1F98; 1F9I; 1GSV; 1GSW;
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