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PROSITE entry PS50095


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50095
Entry name [info] PLAT
Accession [info] PS50095
Entry type [info] MATRIX
Date [info] 01-APR-2003 CREATED;
01-OCT-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50095
Associated ProRule [info] PRU00152

Name and characterization of the entry

Description [info] PLAT domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=118;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=113;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5281; R2=0.03316360; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=181; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=120; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 167 in 139 different sequences
Number of true positive hits 167 in 139 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 4
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.66 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 15
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] PLAT
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
139 sequences

ALOX8_MOUSE (O35936), AOSL_PLEHO  (O16025), DEN5A_HUMAN (Q6IQ26), 
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UniProtKB/Swiss-Prot
False negative sequences
4 sequences

ATS3A_ARATH (Q681K2), ATS3B_ARATH (Q6NPM5), ATS3_ARATH  (Q9LYP6), 
» more

PDB
[Detailed view]
86 PDB

1BU8; 1CA1; 1ETH; 1F8N; 1FGM; 1FGO; 1FGQ; 1FGR; 1FGT; 1GPL; 1GYG; 1HPL;
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