PROSITE entry PS01360
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General information about the entry
Entry name [info] | ZF_MYND_1 |
Accession [info] | PS01360 |
Entry type [info] | PATTERN |
Date [info] |
01-JAN-2003 CREATED;
01-JAN-2003 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC50865 |
Name and characterization of the entry
Description [info] | Zinc finger MYND-type signature. |
Pattern [info] |
[CH]-x(2,4)-C-x(7,17)-C-x(0,2)-C-x(4)-[YFT]-C-x(3)-[CH]-x(6,9)-H- x(3,4)-C. |
Numerical results [info]
Total number of hits | 104 in 104 different sequences |
Number of true positive hits | 101 in 101 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 3 in 3 different sequences |
Number of false negative sequences | 9 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 97.12 % |
Recall (true positives / (true positives + false negatives)) | 91.82 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
101 sequences
ANKY1_HUMAN (Q9P2S6), ANKY2_BOVIN (Q0VCS9), ANKY2_CHICK (Q5ZMD2), ANKY2_HUMAN (Q8IV38), ANKY2_MOUSE (Q3TPE9), ANMY1_MOUSE (Q8C0W1), ASHR1_ARATH (Q7XJS0), DEAF1_DROME (Q24180), DEAF1_HUMAN (O75398), DEAF1_MOUSE (Q9Z1T5), DEAF1_PANTR (O77562), DEAF1_RAT (O88450), EGL9_CAEEL (G5EBV0), EGLN1_HUMAN (Q9GZT9), EGLN1_MOUSE (Q91YE3), FB342_ARATH (Q9FK27), FB76_ARATH (Q9FYF9), GACZ_DICDI (Q55DW9), MSS51_HUMAN (Q4VC12), MSS51_MOUSE (Q9D5Z5), MSS51_RAT (D3ZKV9), MTG16_CHICK (Q5F3B1), MTG16_HUMAN (O75081), MTG16_MOUSE (O54972), MTG8R_HUMAN (O43439), MTG8R_MOUSE (O70374), MTG8R_XENLA (Q9IAB2), MTG8_HUMAN (Q06455), MTG8_MOUSE (Q61909), MUB1_ASPCL (A1CBG9), MUB1_ASPFC (B0Y1D1), MUB1_ASPFN (B8NKS1), MUB1_ASPFU (Q4WVI6), MUB1_ASPNC (A2RA63), MUB1_ASPOR (Q2U685), MUB1_ASPTN (Q0CW83), MUB1_EMENI (O42631), MUB1_NEOFI (A1DDX0), MUB1_SCHPO (P87311), MUB1_YEAST (Q03162), PDCD2_BOVIN (Q2YDC9), PDCD2_HUMAN (Q16342), PDCD2_MOUSE (P46718), PDCD2_RAT (P47816), SET14_CAEEL (Q09415), SET6_SCHPO (O94256), SMY2A_DANRE (Q5BJI7), SMY2A_XENLA (Q7ZXV5), SMY2B_DANRE (Q5RGL7), SMY2B_XENLA (Q6GN68), SMYD1_HUMAN (Q8NB12), SMYD1_MOUSE (P97443), SMYD2_BOVIN (Q0P585), SMYD2_CHICK (E1C5V0), SMYD2_HUMAN (Q9NRG4), SMYD2_MOUSE (Q8R5A0), SMYD2_PIG (C3RZA1), SMYD2_RAT (Q7M6Z3), SMYD3_HUMAN (Q9H7B4), SMYD3_MOUSE (Q9CWR2), SMYD4_CHICK (Q5F3V0), SMYD4_DANRE (Q08C84), SMYD4_HUMAN (Q8IYR2), SMYD4_MOUSE (Q8BTK5), SMYD4_PONAB (Q5R5X9), SMYDL_CAEEL (Q8I4F7), TDRD1_DANRE (Q58EK5), TDRD1_HUMAN (Q9BXT4), TDRD1_MOUSE (Q99MV1), TDRD1_ORYLA (A9CPT4), UBP15_ARATH (Q9FPS9), UBP15_ORYSJ (Q0E2F9), UBP16_ARATH (Q9SB51), UBP17_ARATH (Q9FKP5), UBP18_ARATH (Q67XW5), UBP19_ARATH (Q9SJA1), UBP19_HUMAN (O94966), UBP19_MOUSE (Q3UJD6), UBP19_RAT (Q6J1Y9), Y2140_DICDI (Q54DL6), Y2454_DICDI (Q54D67), Y3589_DICDI (Q557F7), Y3591_DICDI (Q557F6), Y4059_DICDI (Q54Q80), Y7331_DICDI (Q54ZX8), Y8495_DICDI (Q54IV4), YR331_MIMIV (Q5UQS2), ZMY10_DANRE (F1QN74), ZMY10_DROME (Q9VU41), ZMY10_HUMAN (O75800), ZMY10_MOUSE (Q99ML0), ZMY10_RAT (Q6AXZ5), ZMY10_XENLA (Q5FWU8), ZMY11_HUMAN (Q15326), ZMY11_MOUSE (Q8R5C8), ZMY12_HUMAN (Q9H0C1), ZMY19_HUMAN (Q96E35), ZMY19_MOUSE (Q9CQG3), ZMY19_RAT (Q7TSV3), ZMYD8_DROME (Q7KRS9), ZMYD8_HUMAN (Q9ULU4)» more
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UniProtKB/Swiss-Prot False negative sequences |
9 sequences
ATXR2_ARATH (Q5PP37), BIG_ARATH (Q9SRU2), BIG_ORYSJ (B9G2A8), SMYD5_CHICK (Q5ZIZ2), SMYD5_DANRE (F1RET2), SMYD5_HUMAN (Q6GMV2), SMYD5_MOUSE (Q3TYX3), SMYD5_XENLA (Q6GPQ4), ZMY15_HUMAN (Q9H091)» more |
UniProtKB/Swiss-Prot False positive sequences |
3 sequences
SET5_CRYNB (P0CR43), SET5_CRYNJ (P0CR42), VE5_MMPV1 (P24834) |
PDB [Detailed view] |
69 PDB
2D8Q; 2DAN; 2DJ8; 2JW6; 2OD1; 2ODD; 3MEK; 3N71; 3OXF; 3OXG; 3OXL; 3PDN; 3QWP; 3QWV; 3QWW; 3RIB; 3RU0; 3S7B; 3S7D; 3S7F; 3S7J; 3TG4; 3TG5; 4A24; 4O6F; 4WUY; 4YND; 5ARF; 5ARG; 5CCL; 5CCM; 5EX0; 5EX3; 5HDA; 5HI7; 5HQ8; 5KJK; 5KJL; 5KJM; 5KJN; 5MQ4; 5V37; 5V3H; 5WCG; 5XXD; 5XXG; 5XXJ; 5YJO; 6CBX; 6CBY; 6IJL; 6MON; 6N3G; 6O9O; 6P6G; 6P6K; 6P7Z; 6PAF; 6YUH; 6ZRB; 7BJ1; 7O2A; 7O2B; 7O2C; 7QLB; 7QNR; 7QNU; 8J07; 8OWO » more |