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PROSITE entry PS01230


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PURL: https://purl.expasy.org/prosite/signature/PS01230

Direct ScanProsite submission
General information about the entry

Entry name [info] TRMA_1
Accession [info] PS01230
Entry type [info] PATTERN
Date [info] 01-NOV-1997 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00945
Associated ProRule [info] PRU10015

Name and characterization of the entry

Description [info] RNA methyltransferase trmA family signature 1.
Pattern [info]
[DN]-P-[PAS]-R-x-G-x(14,19)-[LIVMAF]-[LIVMCAFT]-[YAHG]-x-[SAG]-C-
[NAMDSYHKGQ]-x(1,2)-[TNKSI].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 528 in 528 different sequences
Number of true positive hits 527 in 527 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 34
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 99.81 %
Recall (true positives / (true positives + false negatives)) 93.94 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site at position 13
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
527 sequences

ARLMC_PYRAB (Q9UZK1), ARLMC_PYRFU (Q8U2K7), ATRMA_PYRAB (Q9UZR7), 
» more

UniProtKB/Swiss-Prot
False negative sequences
34 sequences

ARLMC_PYRHO (O58994), RLMD_ACISJ  (A1W8J9), RLMD_ALBFT  (Q21UR3), 
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

TRMA_NEIGO  (P55134)

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

C3H24_ARATH (Q8L7S3)

		
PDB
[Detailed view]
11 PDB

1UWV; 2BH2; 2JJQ; 2VS1; 3BT7; 5XJ1; 5XJ2; 5ZQ0; 5ZQ1; 5ZQ8; 5ZTH