PROSITE entry PS01166

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General information about the entry

PURL [info]	https://purl.expasy.org/prosite/signature/PS01166
Entry name [info]	RNA_POL_BETA
Accession [info]	PS01166
Entry type [info]	PATTERN
Date [info]	01-NOV-1997 CREATED; 01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00896

Name and characterization of the entry

Description [info]	RNA polymerases beta chain signature.
Pattern [info]	G-x-[KN]-[LIVMFA]-[STAC]-[GSTNR]-x-[HSTA]-[GSAI]-[QNH]-K-[GL]-[IVTEC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.

Total number of hits	944 in 942 different sequences
Number of true positive hits	943 in 941 different sequences
Number of 'unknown' hits	0
Number of false positive hits	1
Number of false negative sequences	6
Number of 'partial' sequences	3

Precision (true positives / (true positives + false positives))	99.89 %
Recall (true positives / (true positives + false negatives))	99.37 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info]	2
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	941 sequences LEF8_NPVAC (P41452), NRPA2_ARATH (F4I366), NRPB2_ARATH (P38420), » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	6 sequences RPB2_IIV6 (Q91F97), RPOB_CYCTA (A6H5F9), RPOB_EIMTE (Q7YN57), » more
UniProtKB/Swiss-Prot 'Partial' sequences	3 sequences RPOB_LIBAF (P41187), RPOB_LIBAS (P36251), RPOB_MYCPR (Q9RQZ7)
UniProtKB/Swiss-Prot False positive sequences	1 sequence PYRB_LAWIP (Q1MQ55)
PDB [Detailed view]	866 PDB 1HQM; 1I3Q; 1I50; 1I6H; 1I6V; 1IW7; 1K83; 1L9U; 1L9Z; 1NIK; 1NT9; 1PQV; » more