PROSITE entry PS01156
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PURL: https://purl.expasy.org/prosite/signature/PS01156
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General information about the entry
| Entry name [info] | TONB_DEPENDENT_REC_2 |
| Accession [info] | PS01156 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00354 |
| Associated ProRule [info] | PRU10144 |
Name and characterization of the entry
| Description [info] | TonB-dependent receptor (TBDR) proteins signature 2. |
| Pattern [info] |
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]- [LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>. |
Numerical results [info]
| Total number of hits | 81 in 81 different sequences |
| Number of true positive hits | 80 in 80 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 1 |
| Number of false negative sequences | 42 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.77 % |
| Recall (true positives / (true positives + false negatives)) | 65.57 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
80 sequences
BTUB_CITFR (O52903), BTUB_CROS8 (A7ML93), BTUB_ECO24 (A7ZUI6),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
42 sequences
BFRD_BORPE (P81549), BHUA_BRUA2 (Q2YJB2), BHUA_BRUAB (Q576D7),» more |
| UniProtKB/Swiss-Prot False positive sequences |
1 sequence
SLAP1_THET8 (Q5SH37) |
| PDB [Detailed view] |
65 PDB
1BY3; 1BY5; 1FCP; 1FEP; 1FI1; 1KMO; 1KMP; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; » more |