PROSITE entry PS01156
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General information about the entry
Entry name [info] | TONB_DEPENDENT_REC_2 |
Accession [info] | PS01156 |
Entry type [info] | PATTERN |
Date [info] |
01-NOV-1995 CREATED;
01-DEC-2001 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00354 |
Associated ProRule [info] | PRU10144 |
Name and characterization of the entry
Description [info] | TonB-dependent receptor (TBDR) proteins signature 2. |
Pattern [info] |
[LYGSTANEQ]-x(3)-[GSTAENQ]-x-[PGE]-R-x-[LIVFYWA]-x-[LIVMFTA]-[STAGNQ]- [LIVMFYGTA]-x-[LIVMFYWGTADQ]-x-F>. |
Numerical results [info]
Total number of hits | 81 in 81 different sequences |
Number of true positive hits | 80 in 80 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 1 |
Number of false negative sequences | 41 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 98.77 % |
Recall (true positives / (true positives + false negatives)) | 66.12 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
80 sequences
BTUB_CITFR (O52903), BTUB_CROS8 (A7ML93), BTUB_ECO24 (A7ZUI6), BTUB_ECO57 (Q8X714), BTUB_ECOHS (A8A774), BTUB_ECOK1 (A1AIE8), BTUB_ECOL5 (Q0TA90), BTUB_ECOL6 (Q8CVJ0), BTUB_ECOLI (P06129), BTUB_ECOLX (Q93SE0), BTUB_ECOUT (Q1R3U1), BTUB_ENT38 (A4WG45), BTUB_PECAS (Q6CZB5), BTUB_SALCH (Q57H87), BTUB_SALPA (Q5PK67), BTUB_SALTI (Q8Z314), BTUB_SALTY (P37409), BTUB_SHIDS (Q32AE6), BTUB_SHIF8 (Q0SY25), BTUB_SHIFL (Q83IS4), BTUB_SHISS (Q3YV10), BTUB_VIBC3 (A5F4P6), BTUB_VIBCH (Q9KVI9), BTUB_VIBCM (C3LPZ6), BTUB_VIBPA (Q87KN9), BTUB_VIBVU (Q8DD41), BTUB_YERP3 (A7FD14), BTUB_YERPA (Q1CBU1), BTUB_YERPE (Q8ZAA1), BTUB_YERPN (Q1CNP0), BTUB_YERPP (A4TRG0), BTUB_YERPS (Q66G57), CIRA_ECOLI (P17315), FATA_VIBA7 (P11461), FCUA_YEREN (Q05202), FECA_ECOLI (P13036), FEPA_ECOLI (P05825), FHUA_ECOLI (P06971), FHUE_ECOLI (P16869), FOXA_YEREN (Q01674), FPTA_PSEAE (P42512), FPVA_PSEAE (P48632), HGBA_HAEIF (Q9KIV2), HGBB_HAEIF (Q9KIV1), HGBC_HAEIF (Q9KIV0), HGP1_HAEIN (P44795), HGP2_HAEIN (P44809), HGP3_HAEIN (P44836), HGP4_HAEIN (Q57408), HGPA_HAEIF (Q9ZA21), HGPB_HAEIF (O87296), HGPC_HAEIF (Q9X442), HHUA_HAEIF (Q48153), HPUB_NEIMA (Q9JWA2), HPUB_NEIMC (P96949), HXUC1_HAEIN (P44600), HXUC2_HAEIF (P45357), HXUC_HAEI8 (Q4QNS6), IRGA_VIBC3 (A5F9G0), IRGA_VIBCH (P0C6R0), IUTA_ECOLX (P14542), IUTA_KLEPN (Q6U607), LBPA_NEIMA (Q9JTK4), LBPA_NEIMB (Q06379), PBUA_PSEU4 (Q08017), PFEA_PSEAE (Q05098), PIRA_ACIB2 (D0C8V9), PIRA_PSEAE (Q9I527), PUPA_PSEPU (P25184), PUPB_PSEPU (P38047), TBPA1_NEIMI (Q09056), TBPA2_NEIMI (Q06987), TBPA_HAEIN (P44970), TBPA_NEIGO (Q01996), TBPA_NEIMB (Q9K0U9), TDHA_HAEI8 (Q4QP67), TDHA_HAEIN (P44523), VUUA_VIBVL (Q9L9Z9), Y1217_HAEIN (P45114), Y1497_NEIMB (Q7DDB6)» more
|
UniProtKB/Swiss-Prot False negative sequences |
41 sequences
BFRD_BORPE (P81549), BHUA_BRUA2 (Q2YJB2), BHUA_BRUAB (Q576D7), BHUA_BRUME (Q8YDS0), BHUA_BRUO2 (A5VW32), BTUB_PHOLL (Q7MYE3), BTUB_PHOPR (Q6LLU3), BTUB_VIBC1 (A7MXY8), BTUB_VIBVY (Q7MQ42), CEAB_ECOLX (P05819), CEAD_ECOLX (P17998), CEAM_ECOLX (P05820), CNTO_PSEAB (A0A0H2ZI93), CNTO_PSEAE (Q9HUX3), FCT_DICD3 (Q47162), FIU_ECO57 (Q8X7W7), FIU_ECOL6 (Q8CW90), FIU_ECOLI (P75780), FIU_ECOUT (Q1REC0), FOXA_SALTS (E1W8M5), FOXA_SALTY (P0CL48), FYUA_YERE8 (A1JTG3), FYUA_YEREN (P0C2M9), FYUA_YERPE (P46359), HEMR_YEREN (P31499), HGBA_HAEDU (Q47952), HMUR_YERPE (Q56989), IACT_NOSS1 (Q8YQ14), OAR_MYXXA (P38370), PIUA_ACIB2 (D0CAH3), PIUA_PSEAE (G3XCY8), PLH26_FORAG (T2KM18), PLH39_FORAG (T2KMI3), PLH3_FORAG (T2KPJ3), PQQU_ECOLI (P76115), RHTA_RHIME (Q9Z3Q5), SCHT_NOSS1 (Q8YZR0), SUSC_BACTN (Q8A1G1), TDHA_HAEDU (Q7VNU1), Y146A_HAEIN (O86241), Y964_NEIMB (Q9JZN9)» more |
UniProtKB/Swiss-Prot False positive sequences |
1 sequence
SLAP1_THET8 (Q5SH37) |
PDB [Detailed view] |
65 PDB
1BY3; 1BY5; 1FCP; 1FEP; 1FI1; 1KMO; 1KMP; 1NQE; 1NQF; 1NQG; 1NQH; 1PNZ; 1PO0; 1PO3; 1QFF; 1QFG; 1QJQ; 1QKC; 1UJW; 1XKH; 1XKW; 2FCP; 2GRX; 2GSK; 2GUF; 2HDF; 2HDI; 2IAH; 2O5P; 2W16; 2W6T; 2W6U; 2W75; 2W76; 2W77; 2W78; 2YSU; 3M8B; 3M8D; 3RGM; 3RGN; 3V89; 3V8X; 4CU4; 5FR8; 5M9B; 5MZS; 5NC3; 5NC4; 5NR2; 5ODW; 5OUT; 6E4V; 6I2J; 6Q5E; 6R1F; 6Y47; 6YY5; 6Z2N; 6Z33; 7NSU; 7OBW; 8A60; 8A8C; 8B14 » more |