Search for
You are here: ExPASy CA  > Databases  > PROSITE

Home ScanProsite ProRule Documents Downloads Links Funding
Entry: PS01154

General information about the entry
Entry nameRNA_POL_L_13KD
Accession numberPS01154
Entry typePATTERN
DateNOV-1995 (CREATED); DEC-2004 (DATA UPDATE); JUL-2010 (INFO UPDATE).
PROSITE DocumentationPDOC00889
Name and characterization of the entry
DescriptionRNA polymerases L / 13 to 16 Kd subunits signature.
Pattern[LIVMFA]-x(2)-[EYD]-x-[HYN]-[ST]-[LIVMFY]-x-[NSTR]-x-[LIV]-x(3)-[LIVA]- x(4,5)-[VPG]-x(4)-[FY]-x(3)-[HPY]-[PEV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 09, total number of sequence entries in that release: 519348.
  • Total number of hits in UniProtKB/Swiss-Prot: 69 hits in 69 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 69 hits in 69 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.52 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
RPAC2_BOVIN (Q1RMG8), RPAC2_CAEBR (Q61IX2), RPAC2_CAEEL (P34476), 
RPAC2_DANRE (Q6DRI4), RPAC2_DROME (Q9VIZ0), RPAC2_HUMAN (Q9Y2S0), 
RPAC2_MOUSE (P97304), RPAC2_SCHPO (Q09177), RPAC2_XENLA (Q5XK67), 
RPAC2_YEAST (P28000), RPB11_ANOGA (Q7PVQ9), RPB11_ARATH (Q38859), 
RPB11_BOVIN (Q32P79), RPB11_CAEBR (Q60SM4), RPB11_CAEEL (Q9XVH6), 
RPB11_DROME (Q9VJE4), RPB11_HUMAN (P52435), RPB11_MOUSE (O08740), 
RPB11_PLABA (Q4YZZ7), RPB11_PLACH (Q4XS21), RPB11_PLAF7 (Q8IER7), 
RPB11_SCHPO (P87123), RPB11_YEAST (P38902), RPB1B_HUMAN (Q9GZM3), 
RPB1C_HUMAN (Q9H1A7), RPC19_DICDI (Q54ES6), RPOL_AERPE  (Q9YEZ1), 
RPOL_ARCFU  (O30032), RPOL_HALLT  (B9LTT8), RPOL_HALMA  (Q5V2C7), 
RPOL_HALS3  (B0R4B1), RPOL_HALSA  (Q9HR53), RPOL_HALWD  (Q18JI2), 
RPOL_KORCO  (B1L7Q7), RPOL_METAC  (Q8TSS4), RPOL_METBF  (Q46C10), 
RPOL_METBU  (Q12W27), RPOL_METJA  (Q57832), RPOL_METKA  (Q8TZ81), 
RPOL_METM5  (A4FZS6), RPOL_METM6  (A9A836), RPOL_METM7  (A6VIQ1), 
RPOL_METMA  (Q8PVT0), RPOL_METMP  (Q6M0K9), RPOL_METS5  (A4YHV0), 
RPOL_METTH  (O27372), RPOL_METVS  (A6URP9), RPOL_NANEQ  (Q74MN9), 
RPOL_NATPD  (Q3INY0), RPOL_PICTO  (Q6L204), RPOL_PYRAB  (Q9V2M4), 
RPOL_PYRAE  (Q8ZW46), RPOL_PYRFU  (Q8U4N1), RPOL_PYRHO  (P57671), 
RPOL_PYRKO  (Q5JE88), RPOL_SULAC  (P46217), RPOL_SULIA  (C3MZG6), 
RPOL_SULIK  (C4KIP6), RPOL_SULIL  (C3MRD1), RPOL_SULIM  (C3MXM0), 
RPOL_SULIN  (C3NFY8), RPOL_SULIY  (C3N7I8), RPOL_SULSO  (Q980K0), 
RPOL_SULTO  (Q96YA7), RPOL_THEAC  (Q9HIC5), RPOL_THEGJ  (C5A5J3), 
RPOL_THEON  (B6YTH7), RPOL_THESM  (C6A1R5), RPOL_THEVO  (Q978F5)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RPB11_DICDI (Q86JJ5), RPOL_METTP  (A0B533), RPOL_UNCMA  (Q0W8P1), 
YR470_MIMIV (Q5UQD9)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1XPP; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3K1F; 3K7A; 3M3Y; 3M4O;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or