PROSITE entry PS01129
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PURL: https://purl.expasy.org/prosite/signature/PS01129
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General information about the entry
| Entry name [info] | PSI_RLU |
| Accession [info] | PS01129 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00869 |
Name and characterization of the entry
| Description [info] | Rlu family of pseudouridine synthase signature. |
| Pattern [info] |
[LIVCA]-[NHYTQ]-R-[LI]-[DG]-x(2)-[TV]-[STAC]-G-[LIVAGC]-[LIVMF](2)- [LIVMFGCA]-[SGTACV]. |
Numerical results [info]
| Total number of hits | 125 in 125 different sequences |
| Number of true positive hits | 125 in 125 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 90.58 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
125 sequences
PUS1_ARATH (Q7XA65), PUS1_ORYSJ (Q2QNM3), PUS2_ARATH (Q3ECD0),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
PUS3_ORYSJ (Q0J4D4), PUS4_ARATH (Q9LT72), PUS4_ORYSJ (Q69K07),» more |
| PDB [Detailed view] |
9 PDB
1PRZ; 1QYU; 1V9F; 1V9K; 1XPI; 2I82; 2IST; 5UBA; 7BL5 |