PROSITE entry PS01068
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PURL: https://purl.expasy.org/prosite/signature/PS01068
Direct ScanProsite submission
General information about the entry
| Entry name [info] | OMPA_1 |
| Accession [info] | PS01068 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00819 |
Name and characterization of the entry
| Description [info] | OmpA-like domain. |
| Pattern [info] |
[LIVMA]-x-[GT]-x-[TA]-[DAN]-x(2,3)-[DG]-[GSTPNKQ]-x(2)-[LFYDEPAVI]-[NQS]- x(2)-[LI]-[SG]-[QEA]-[KRQENAD]-R-A-x(2)-[LVAIT]-x(3)-[LIVMF]-x(4,5)- [LIVMF]-x(4)-[LIVM]-x(3)-[SGW]-x-G. |
Numerical results [info]
| Total number of hits | 56 in 56 different sequences |
| Number of true positive hits | 56 in 56 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 12 |
| Number of 'partial' sequences | 2 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 82.35 % |
Comments [info]
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
56 sequences
ARFA_MYCBO (P65594), ARFA_MYCBP (A1KH31), ARFA_MYCTO (P9WIU4),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
12 sequences
LAFU_ECO44 (D3GSC3), LAFU_ECOLI (Q47154), OMP38_ACIB2 (Q6RYW5),» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
OMP5_GLAPU (P85410), OMPA_ACTLI (P80444) |
| PDB [Detailed view] |
15 PDB
1OAP; 1R1M; 2AIZ; 2HQS; 2K1S; 2KGW; 2L26; 2LBT; 2LCA; 2MQE; 2N48; 2W8B; » more |