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PROSITE entry PS01055


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS01055
Entry name [info] DNA_LIGASE_N1
Accession [info] PS01055
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00809
Associated ProRule [info] PRU10136

Name and characterization of the entry

Description [info] NAD-dependent DNA ligase signature 1.
Pattern [info] 
K-[LIVMF]-D-G-[LIVMAS]-[SAG]-x(4)-Y-x(2)-[GRD]-x-[LF]-x(4)-[ST]-R-G-[DN]-
G-x(2)-G-[DE]-[DENL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 723 in 723 different sequences
Number of true positive hits 723 in 723 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 153
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 82.53 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site(?) at position 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 723 sequences 

DNLJ1_NOCFA (Q5YVN7), DNLJ1_OPITP (B1ZWH2), DNLJ1_PSECP (B8HFJ3),
» more

UniProtKB/Swiss-Prot
False negative sequences		 153 sequences 

DNLJ1_CLOAB (Q97JS8), DNLJ1_DEIDV (C1D1Y6), DNLJ1_NITV4 (A1VC99),
» more

PDB
[Detailed view]		 39 PDB

1TA8; 1TAE; 1V9P; 1ZAU; 2OWO; 3BA8; 3BA9; 3BAA; 3BAB; 3BAC; 3JSL; 3JSN;
» more