PROSITE entry PS01044
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PURL: https://purl.expasy.org/prosite/signature/PS01044
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General information about the entry
| Entry name [info] | SQUALEN_PHYTOEN_SYN_1 |
| Accession [info] | PS01044 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00802 |
Name and characterization of the entry
| Description [info] | Squalene and phytoene synthases signature 1. |
| Pattern [info] |
Y-[CSAM]-x(2)-[VSG]-A-[GSA]-[LIVAT]-[IV]-G-x(2)-[LMSC]-x(2)-[LIV]. |
Numerical results [info]
| Total number of hits | 79 in 79 different sequences |
| Number of true positive hits | 76 in 76 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 3 in 3 different sequences |
| Number of false negative sequences | 13 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 96.20 % |
| Recall (true positives / (true positives + false negatives)) | 85.39 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
76 sequences
BSS_BOTBR (Q9SDW9), CLZ20_COCLU (A0A345BJQ0), CRTB_CERS4 (P54905),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
13 sequences
BOCS_BOTBR (G0Y288), BOSS_BOTBR (G0Y287), CRIT_STRCO (Q9ACU1),» more |
| UniProtKB/Swiss-Prot False positive sequences |
3 sequences
GEL4_ASPFC (B0XVI5), GEL4_ASPFU (P0C956), HEXA_PSEO7 (P48823) |
| PDB [Detailed view] |
51 PDB
1EZF; 2ZCO; 2ZCQ; 2ZCR; 2ZCS; 2ZY1; 3ACW; 3ACX; 3ACY; 3AE0; 3ASX; 3LEE; » more |