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PROSITE entry PS01039


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PURL: https://purl.expasy.org/prosite/signature/PS01039

Direct ScanProsite submission
General information about the entry

Entry name [info] SBP_BACTERIAL_3
Accession [info] PS01039
Entry type [info] PATTERN
Date [info] 01-NOV-1995 CREATED;
01-APR-2006 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00798

Name and characterization of the entry

Description [info] Bacterial extracellular solute-binding proteins, family 3 signature.
Pattern [info]
G-[FYIL]-[DE]-[LIVMT]-[DE]-[LIVMF]-{PS}-{YG}-x-[LIVMA]-[VAGC]-{TPRG}-
{GL}-[LIVMAGN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 69 in 69 different sequences
Number of true positive hits 39 in 39 different sequences
Number of 'unknown' hits 0
Number of false positive hits 30 in 30 different sequences
Number of false negative sequences 10
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 56.52 %
Recall (true positives / (true positives + false negatives)) 79.59 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
39 sequences

AABA_DICNO  (P39906), AAPJ_RHIJ3  (Q52812), ARGBP_PSEAE (G3XD47), 
» more

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

ARGT_CORGL  (Q8NQU2), ARTJ_CHLPN  (Q9Z869), ARTJ_CHLTR  (O84385), 
» more

UniProtKB/Swiss-Prot
False positive sequences
30 sequences

DCL3_ARATH  (Q9LXW7), ECHD2_BOVIN (Q2TBT3), HIS61_PROMM (Q7V8Q8), 
» more

PDB
[Detailed view]
44 PDB

1GGG; 1HPB; 1HSL; 1LAF; 1LAG; 1LAH; 1LST; 1WDN; 2IEE; 2LAO; 2V25; 3KBR;
» more