PROSITE entry PS00878
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General information about the entry
Entry name [info] | ODR_DC_2_1 |
Accession [info] | PS00878 |
Entry type [info] | PATTERN |
Date [info] |
01-OCT-1993 CREATED;
01-NOV-1997 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00685 |
Name and characterization of the entry
Description [info] | Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. |
Pattern [info] |
[FY]-[PA]-x-K-[SACV]-[NHCLFW]-x(4)-[LIVMF]-[LIVMTA]-x(2)-[LIVMA]-x(3)- [GTE]. |
Numerical results [info]
Total number of hits | 153 in 153 different sequences |
Number of true positive hits | 130 in 130 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 23 in 23 different sequences |
Number of false negative sequences | 60 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 84.97 % |
Recall (true positives / (true positives + false negatives)) | 68.42 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Site [info] | pyridoxal_phosphate at position 4 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
130 sequences
ADC1A_TOBAC (A0A1S3YCW2), ADC1B_TOBAC (A0A1S3WYR7), ADC2_ORYSJ (Q7XRA1), AZIN2_HUMAN (Q96A70), AZIN2_XENLA (Q9I8S4), DCDA1_ARATH (Q949X7), DCDA2_ARATH (Q94A94), DCDA_AQUAE (O67262), DCDA_ARCFU (O29458), DCDA_BACMT (P41023), DCDA_BACSU (P23630), DCDA_BACTN (Q8A800), DCDA_COREF (Q8RQM6), DCDA_CORGL (P09890), DCDA_ECOLI (P00861), DCDA_ECOLW (E0IWI3), DCDA_FRATH (Q2A5D5), DCDA_HAEIN (P44316), DCDA_HELPJ (Q9ZME5), DCDA_HELPX (B4XMC6), DCDA_HELPY (P56129), DCDA_METJA (Q58497), DCDA_METTH (O27390), DCDA_MYCBO (P0A5M5), DCDA_MYCLE (Q50140), DCDA_MYCS2 (Q9X5M1), DCDA_MYCTO (P9WIU6), DCDA_MYCTU (P9WIU7), DCDA_ORYSJ (Q6ZG77), DCDA_PSEAE (P19572), DCDA_PSEFL (O05321), DCDA_STRCO (Q9ZBH5), DCDA_SYNY3 (Q55484), DCDA_THEMA (Q9X1K5), DCDA_VIBCH (Q9KVL7), DCLO_SELRU (O50657), DCOR1_DROME (P40807), DCOR1_XENLA (P27120), DCOR2_DROME (P40808), DCOR_BOVIN (P27117), DCOR_CAEEL (P41931), DCOR_CANAL (P78599), DCOR_CAPAN (Q8S3N2), DCOR_CHICK (P27118), DCOR_CRIGR (P14019), DCOR_DATST (P50134), DCOR_DICDI (Q54UF3), DCOR_HUMAN (P11926), DCOR_LEIDO (P27116), DCOR_MOUSE (P00860), DCOR_MUSPA (P27119), DCOR_NEUCR (P27121), DCOR_PANRE (P49725), DCOR_RAT(P09057), DCOR_SCHPO (Q9UQW9), DCOR_SOLLC (O22616), DCOR_TRYBB (P07805), DCOR_YEAST (P08432), ODC1A_TOBAC (A0A1S4AUX8), ODC1B_TOBAC (P93351), ODC_NICGL (E0WN94), ODC_NICGU (Q9FPK5), SPE1_ARATH (Q9SI64), SPE1_AVESA (P22220), SPE1_BRAJU (O82475), SPE1_DIACA (Q96412), SPE1_ORYSJ (Q9SNN0), SPE1_PEA(Q43075), SPE1_SOLLC (P49726), SPE1_SOYBN (Q39827), SPE2_ARATH (O23141), SPE2_THECC (O81160), SPEA1_SYNY3 (P74576), SPEA2_SYNY3 (P72587), SPEA_ALKEH (Q0ACK8), SPEA_BACFN (Q5LIQ3), SPEA_BACFR (Q64ZT8), SPEA_BACTN (Q8A2B1), SPEA_CITBB (B5EIW4), SPEA_DEIRA (Q9RXR4), SPEA_ECO57 (Q8XCX9), SPEA_ECO5E (B5YQD6), SPEA_ECOL6 (Q8FE34), SPEA_ECOLI (P21170), SPEA_ECOSM (B1LDE8), SPEA_GEODF (B9M6H6), SPEA_GEOMG (Q39X78), SPEA_GEOSL (A0A4W3), SPEA_GEOSM (C6E3V4), SPEA_GEOUR (A5GB52), SPEA_GLOVI (Q7NE10), SPEA_HAMD5 (C4K6F4), SPEA_KLEP3 (B5XUB1), SPEA_MARN8 (A1TY02), SPEA_NEIMA (Q9JT25), SPEA_NEIMB (Q9K0U3), SPEA_NOSS1 (Q8YRP3), SPEA_PARMW (Q7U3S0), SPEA_PASMU (Q9CL60), SPEA_PELPD (A1AS90), SPEA_PHOLL (Q7N121), SPEA_PHOV8 (A6L012), SPEA_PROM0 (A3PA96), SPEA_PROM2 (A8G243), SPEA_PROM3 (A2CDK1), SPEA_PROM5 (A2BU00), SPEA_PROM9 (Q31DD8), SPEA_PROMA (Q7VEG4), SPEA_PROMH (B4F1A4), SPEA_PROMM (Q7TUJ9), SPEA_PROMP (Q7V3M9), SPEA_PROMS (A2BNH3), SPEA_PSEAE (Q9HUX1), SPEA_RHOBA (Q7UTS2), SPEA_SALA4 (B5F5L1), SPEA_SALCH (Q57K30), SPEA_SALDC (B5FUJ7), SPEA_SALHS (B4THH1), SPEA_SALNS (B4T5J3), SPEA_SALPB (A9N4N1), SPEA_SALSV (B4TV55), SPEA_SALTI (P60658), SPEA_SALTY (P60659), SPEA_SHIF8 (Q0T0V3), SPEA_SHIFL (Q83Q93), SPEA_SYNR3 (A5GWM2), SPEA_THEVB (Q8DHY6), SPEA_TRIL1 (B3EAF3), SPEA_YERPE (Q8ZHG8), TABA_PSEAJ (P31851)» more
|
UniProtKB/Swiss-Prot False negative sequences |
60 sequences
AZIN1_HUMAN (O14977), AZIN1_MOUSE (O35484), AZIN1_PONAB (Q5R7K3), AZIN1_RAT (Q63764), AZIN2_MOUSE (Q8BVM4), BTRK_NIACI (Q2L4H3), DCDA_ACTPA (O69203), DCDA_BUCAI (P57513), DCDA_BUCAP (Q8K9C4), DCDA_BUCBP (Q89AC6), DCDA_CAMJE (Q9PII5), DCDA_DEIRA (Q9RTK2), DCDA_HALH5 (Q9KCM5), DCDA_NEIMA (Q9JWA6), DCDA_NEIMB (Q9JXM2), DCDA_THEAC (Q9HK20), DCDA_ZYMMO (Q9Z661), DOKDC_SALTY (Q8ZNC4), NSPC_CAMJ8 (A8FNH9), NSPC_HERAR (Q5QCP2), NSPC_VIBAL (Q56575), NSPC_VIBCH (Q9KRL4), NSPC_VIBCO (C6YCI2), NSPC_VIBVU (Q8D8D2), SBNH_STAA8 (Q2G1M6), SPEA_AERHH (A0KIP8), SPEA_AERS4 (A4SPD6), SPEA_CHRVO (Q7NU27), SPEA_PSEPK (Q88QC7), SPEA_PSESM (Q87VU3), SPEA_SHEAM (A1S712), SPEA_SHEB2 (B8EAI2), SPEA_SHEB5 (A3D3G2), SPEA_SHEB8 (A6WM65), SPEA_SHEB9 (A9KY70), SPEA_SHEDO (Q12LW6), SPEA_SHEFN (Q083L6), SPEA_SHEHH (B0TQX3), SPEA_SHELP (A3QDD8), SPEA_SHEON (Q8EFU5), SPEA_SHEPA (A8H5G3), SPEA_SHEPC (A4Y5Y9), SPEA_SHEPW (B8CR70), SPEA_SHESA (A0KVN8), SPEA_SHESH (A8FWJ3), SPEA_SHESM (Q0HJY2), SPEA_SHESR (Q0HW78), SPEA_SHESW (A1RKK8), SPEA_SHEWM (B1KRD4), SPEA_TOLAT (C4L9A9), SPEA_VIBCH (Q9KLD1), SPEA_VIBPA (Q87JS8), SPEA_VIBVU (Q8DA54), SPEA_VIBVY (Q7MK24), SPEA_XANAC (Q8PFQ5), SPEA_XANCP (Q8P448), SPEA_XYLF2 (B2I6M1), SPEA_XYLFA (Q9PH02), SPEA_XYLFM (B0U1H6), SPEA_XYLFT (Q87F25)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
DCOR_PARBR (Q92445) |
UniProtKB/Swiss-Prot False positive sequences |
23 sequences
AR280_ARTOA (G1XU01), ASB2_BOVIN (Q3SX45), ASB2_HUMAN (Q96Q27), ASB2_MOUSE (Q8K0L0), ASB2_RAT(Q5U2S6), CLAH1_ARATH (Q0WNJ6), CLAH2_ARATH (Q0WLB5), CMOA_SULDN (Q30T90), KS6A4_HUMAN (O75676), KS6A4_MOUSE (Q9Z2B9), KS6A5_CHICK (Q5F3L1), KS6A5_HUMAN (O75582), KS6A5_MOUSE (Q8C050), KS6A5_PONAB (Q5R4K3), MGLA_VIBCH (Q9KSD1), PHS1_SOLLC (C1K5M3), POLN_CRPVC (Q9IJX4), RPB1_FRG3G (Q6GZW7), SCN8A_HUMAN (Q9UQD0), SCN8A_MOUSE (Q9WTU3), SCN8A_RAT (O88420), SYY_STRMU (Q8DS44), TBAL3_MOUSE (Q3UX10)» more |
PDB [Detailed view] |
32 PDB
1D7K; 1F3T; 1HKV; 1HKW; 1KNW; 1KO0; 1QU4; 1SZR; 1TUF; 1TWI; 2O0T; 2ON3; 2OO0; 2P3E; 2QGH; 2YXX; 3C5Q; 3N2B; 3NZQ; 4ZGY; 5BWA; 5GJM; 5GJN; 5GJO; 5GJP; 5X7M; 5X7N; 6N2A; 6N2F; 7ODC; 7S3F; 7S3G » more |