PROSITE entry PS00853
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PURL: https://purl.expasy.org/prosite/signature/PS00853
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General information about the entry
| Entry name [info] | BETA_ELIM_LYASE |
| Accession [info] | PS00853 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00667 |
Name and characterization of the entry
| Description [info] | Beta-eliminating lyases pyridoxal-phosphate attachment site. |
| Pattern [info] |
[YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G. |
Numerical results [info]
| Total number of hits | 59 in 59 different sequences |
| Number of true positive hits | 59 in 59 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 9 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 86.76 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | pyridoxal_phosphate at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
59 sequences
BELY_TRIV3 (A2EYC4), TNAA1_SYMTH (P31014), TNAA2_SYMTH (P31015),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
9 sequences
TNAA_AERHH (A0KJP3), TNAA_AERS4 (A4SNA7), TNAA_HYPNA (Q0C406),» more |
| PDB [Detailed view] |
43 PDB
1AX4; 1C7G; 1TPL; 2C44; 2EZ1; 2EZ2; 2OQX; 2TPL; 2V0Y; 2V1P; 2VLF; 2VLH; » more |