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Entry: PS00762

General information about the entry
Entry nameWHEP_TRS_1
Accession numberPS00762
Entry typePATTERN
DateDEC-1992 (CREATED); APR-2006 (DATA UPDATE); FEB-2010 (INFO UPDATE).
PROSITE DocumentationPDOC00614
Name and characterization of the entry
DescriptionWHEP-TRS domain signature.
Pattern[QYR]-[GH]-[DNEAR]-x-[LIV]-[KR]-x(2)-K-x(2)-[KRNG]-[AS]-x(4)-[LIV]- [DENKA]-x(2)-[IV]-x(2)-L-x(3)-K.
Numerical results
  • UniProtKB/Swiss-Prot release number: 57.15, total number of sequence entries in that release: 515203.
  • Total number of hits in UniProtKB/Swiss-Prot: 33 hits in 25 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 33 hits in 25 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 94.29 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 6
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
SYEP_DROME  (P28668), SYEP_HUMAN  (P07814), SYEP_MOUSE  (Q8CGC7), 
SYGM1_ARATH (O23627), SYG_BOMMO   (Q04451), SYG_CAEEL   (Q10039), 
SYG_HUMAN   (P41250), SYG_MOUSE   (Q9CZD3), SYG_PONAB   (Q5RBL1), 
SYHC_BOVIN  (Q2KI84), SYHC_HUMAN  (P12081), SYHC_MESAU  (P07178), 
SYHC_MOUSE  (Q61035), SYHC_PONAB  (Q5R4R2), SYH_SCHPO   (O43011), 
SYMC_BOVIN  (Q2T9L8), SYMC_HUMAN  (P56192), SYMC_MOUSE  (Q68FL6), 
SYMC_XENLA  (Q6PF21), SYWC_BOVIN  (P17248), SYWC_HUMAN  (P23381), 
SYWC_MOUSE  (P32921), SYWC_PONAB  (Q5R4J1), SYWC_RABIT  (P23612), 
SYWC_RAT    (Q6P7B0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
SYNC1_ARATH (Q9SW96), SYNC3_ARATH (Q9SSK1)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
SYEP_CRIGR  (Q7SIA2), SYG_RAT     (Q5I0G4)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1FYJ; 1R6T; 1X59; 2DJV;

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