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Entry: PS00723

General information about the entry
Entry namePOLYPRENYL_SYNTHET_1
Accession numberPS00723
Entry typePATTERN
DateDEC-1992 (CREATED); NOV-1997 (DATA UPDATE); FEB-2010 (INFO UPDATE).
PROSITE DocumentationPDOC00407
Name and characterization of the entry
DescriptionPolyprenyl synthetases signature 1.
Pattern[LIVM](2)-x-D-D-x(2,4)-D-x(4)-R-R-[GH].
Numerical results
  • UniProtKB/Swiss-Prot release number: 57.15, total number of sequence entries in that release: 515203.
  • Total number of hits in UniProtKB/Swiss-Prot: 80 hits in 80 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 80 hits in 80 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 11
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 87.91 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
COQ1_NEUCR  (Q7S565), COQ1_YARLI  (Q6CBH3), COQ1_YEAST  (P18900), 
CPPAS_TANCI (P0C565), CRTE_CYAPA  (P48368), CRTE_ESCVU  (P22873), 
CRTE_PANAN  (P21684), CRTE_RHOCA  (P17060), CRTE_RHOS4  (P54976), 
DPS1_HUMAN  (Q5T2R2), DPS1_MOUSE  (Q33DR2), DPS1_SCHPO  (O43091), 
FPPS1_ARATH (Q09152), FPPS1_LUPAL (P49351), FPPS1_PARAR (O24241), 
FPPS2_ARATH (Q43315), FPPS2_LUPAL (P49352), FPPS2_PARAR (O24242), 
FPPS_ARTAN  (P49350), FPPS_BOVIN  (Q8WMY2), FPPS_CHICK  (P08836), 
FPPS_GIBFU  (Q92235), FPPS_HELAN  (O64905), FPPS_HUMAN  (P14324), 
FPPS_KLULA  (P49349), FPPS_MAIZE  (P49353), FPPS_MOUSE  (Q920E5), 
FPPS_NEUCR  (Q92250), FPPS_RAT    (P05369), FPPS_SCHPO  (O14230), 
FPPS_YEAST  (P08524), GGPP1_ARATH (P34802), GGPP2_ARATH (O04046), 
GGPP3_ARATH (Q9LUD9), GGPP4_ARATH (Q9SLG2), GGPP6_ARATH (O22043), 
GGPPS_ASHGO (Q758K0), GGPPS_BOVIN (P56966), GGPPS_CAPAN (P80042), 
GGPPS_CATRO (Q42698), GGPPS_DICDI (Q54BK1), GGPPS_GIBFU (Q92236), 
GGPPS_HEVBR (Q94ID7), GGPPS_HUMAN (O95749), GGPPS_MOUSE (Q9WTN0), 
GGPPS_MYCBO (P0A5H9), GGPPS_MYCTU (P0A5H8), GGPPS_NEUCR (P24322), 
GGPPS_RAT   (Q6F596), GGPPS_RHIRA (Q9P885), GGPPS_SCHPO (O59703), 
GGPPS_SINAL (Q43133), GGPPS_YEAST (Q12051), GGPS_SULAC  (P39464), 
GGPS_SULSO  (P95999), GGR_ARATH   (Q39108), HEPS2_BACST (P55785), 
HEPS2_BACSU (P31114), IDSA_METJA  (Q58270), IDSA_METTH  (O26156), 
IDSA_METTM  (Q53479), ISPA_AQUAE  (O66952), ISPA_BACST  (Q08291), 
ISPA_BACSU  (P54383), ISPA_BRAJA  (Q45220), ISPA_BUCAI  (P57537), 
ISPA_BUCAP  (Q8K9A0), ISPA_ECOLI  (P22939), ISPA_HAEIN  (P45204), 
ISPA_MICLU  (O66126), ISPA_RHISN  (P55539), ISPB_ECOLI  (P0AD57), 
ISPB_HAEIN  (P44916), ISPB_SHIFL  (P0AD58), PREA_CYACA  (Q9TLS1), 
PREA_CYAPA  (P31171), PREA_PORPU  (P51268), PREA_PORYE  (Q1XDL8), 
Y8742_DICDI (Q55EU7), Y8823_DICDI (Q54XP1)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
DLP1_HUMAN  (Q86YH6), DLP1_MOUSE  (Q33DR3), DLP1_RAT    (Q5U2R1), 
DLP1_SCHPO  (O13851), DPS1_DICDI  (Q54VJ9), PREA_SYNY3  (P72580), 
TPRT_ASFB7  (Q65164), TPRT_ASFK5  (P0C9E2), TPRT_ASFM2  (Q8V9T7), 
TPRT_ASFP4  (P0C9E0), TPRT_ASFWA  (P0C9E1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1FPS; 1RQI; 1RQJ; 1UBV; 1UBW; 1UBX; 1UBY; 1YQ7; 1YV5; 1ZW5; 2DH4; 2E8T; 2E8U; 2E8V; 2E8W; 2E8X; 2E90; 2E91; 2E92; 2E93; 2E94; 2E95; 2F7M; 2F89; 2F8C; 2F8Z; 2F92; 2F94; 2F9K; 2J1P; 2OPM; 2OPN; 2Q80; 2QIS; 2RAH; 2VF6; 2Z4V; 2Z4W; 2Z4X; 2Z4Y; 2Z4Z; 2Z50; 2Z52; 2Z78; 2Z7H; 2Z7I; 2ZEU; 2ZEV; 3B7L; 3CP6;

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