PROSITE entry PS00691
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
Entry name [info] | DNA_PHOTOLYASES_1_2 |
Accession [info] | PS00691 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-DEC-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00331 |
Name and characterization of the entry
Description [info] | DNA photolyases class 1 signature 2. |
Pattern [info] |
[DN]-R-x-R-[LIVM]-[LIVMN]-x-[STA]-[STAQ]-F-[LIVMFA]-x-K-x-L-x(2,3)-W- [KRQ]. |
Numerical results [info]
Total number of hits | 17 in 17 different sequences |
Number of true positive hits | 17 in 17 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 3 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 85.00 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
17 sequences
CRY1_ARATH (Q43125), CRY1_SINAL (P40115), CRY2_ARATH (Q96524), PHRA_AGRFC (A9CJC9), PHR_ALKPO (Q04449), PHR_BUCAI (P57386), PHR_BUCBP (Q89AJ9), PHR_ECOLI (P00914), PHR_HALSA (Q9HQ46), PHR_NEUCR (P27526), PHR_SALTY (P25078), PHR_STRGR (P12768), PHR_SYNY3 (Q55081), PHR_THET2 (P61496), PHR_THET8 (P61497), PHR_VIBCH (Q9KNA8), PHR_YEAST (P05066)» more
|
UniProtKB/Swiss-Prot False negative sequences |
3 sequences
PHR_SYNP6 (P05327), UVR3_ARATH (O48652), UVR3_ORYSJ (Q0E2Y1) |
PDB [Detailed view] |
17 PDB
1DNP; 1IQR; 1IQU; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09; 4U63; 6X24 » more |