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PROSITE entry PS00688


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PURL: https://purl.expasy.org/prosite/signature/PS00688

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General information about the entry

Entry name [info] SIGMA54_INTERACT_3
Accession [info] PS00688
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED;
01-JUN-1994 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain C-terminal part signature.
Pattern [info]
[FYW]-P-[GS]-N-[LIVM]-R-[EQ]-L-x-[NHAT].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 142 in 142 different sequences
Number of true positive hits 142 in 142 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 13
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.61 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
142 sequences

ACOR_BACSU  (O31551), ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), 
» more

UniProtKB/Swiss-Prot
False negative sequences
13 sequences

DGAR_SALT1  (D0ZLR9), DHAR_CITFR  (P45512), DHAR_ECOLI  (P76016), 
» more

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710), 
» more

PDB
[Detailed view]
22 PDB

1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2VII; 4QNM; 4QNR; 4QOS; 5EXP; 5EXS;
» more