PROSITE entry PS00676
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PURL: https://purl.expasy.org/prosite/signature/PS00676
Direct ScanProsite submission
General information about the entry
Entry name [info] | SIGMA54_INTERACT_2 |
Accession [info] | PS00676 |
Entry type [info] | PATTERN |
Date [info] |
01-JUN-1992 CREATED;
01-APR-2006 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00579 |
Name and characterization of the entry
Description [info] | Sigma-54 interaction domain ATP-binding region B signature. |
Pattern [info] |
[GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]- [EK]-[LIVM]. |
Numerical results [info]
Total number of hits | 143 in 143 different sequences |
Number of true positive hits | 138 in 138 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 5 in 5 different sequences |
Number of false negative sequences | 19 |
Number of 'partial' sequences | 3 |
Precision (true positives / (true positives + false positives)) | 96.50 % |
Recall (true positives / (true positives + false negatives)) | 87.90 % |
Comments [info]
Taxonomic range [info] | Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 1 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
138 sequences
ACOR_CUPNH (P28614), ALGB_PSEAE (P23747), ALGB_PSEPK (Q88RJ6),» more
|
UniProtKB/Swiss-Prot False negative sequences |
19 sequences
ACOR_BACSU (O31551), DGAR_SALT1 (D0ZLR9), FHLA_ECOLI (P19323),» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
3 sequences
NIFA_AZOCH (P56269), NTRC_VIBAL (P19905), YFHA_KLEOX (P21710) |
UniProtKB/Swiss-Prot False positive sequences |
5 sequences
CLPX_BORBU (O51557), CLPX_BORGP (Q660R1), CLPX_CAMJE (Q9PIM0),» more |
PDB [Detailed view] |
20 PDB
1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2C9C; 2VII; 5EXP; 5EXS; 5EXT; 5EXX; » more |