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Entry: PS00516

General information about the entry
Entry nameALKYLBASE_DNA_GLYCOS
Accession numberPS00516
Entry typePATTERN
DateDEC-1991 (CREATED); DEC-2004 (DATA UPDATE); FEB-2010 (INFO UPDATE).
PROSITE DocumentationPDOC00447
Name and characterization of the entry
DescriptionAlkylbase DNA glycosidases alkA family signature.
PatternG-[IV]-[GK]-x-W-[ST]-[AVI]-x-[LIVMFY](2)-x-[LIVM]-x(8)-[MF]-x(2)-[ED]-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 57.15, total number of sequence entries in that release: 515203.
  • Total number of hits in UniProtKB/Swiss-Prot: 5 hits in 5 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 5 hits in 5 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 83.33 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
3MG2_ECOLI  (P04395), 3MGA_BACSU  (P37878), MAG1_SCHPO  (Q92383), 
MAG2_SCHPO  (O94468), MAG_YEAST   (P22134)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
YFJP_BACSU  (O31544)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		1DIZ; 1MPG; 1PVS; 3CVS; 3CVT; 3CW7; 3CWA; 3CWS; 3CWT; 3CWU; 3D4V;

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