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| Entry: PS00478 |
| General information about the entry | |
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| Entry name | LIM_DOMAIN_1 |
| Accession number | PS00478 |
| Entry type | PATTERN |
| Date | MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); FEB-2010 (INFO UPDATE). |
| PROSITE Documentation | PDOC00382 |
| Name and characterization of the entry | |
| Description | LIM zinc-binding domain signature. |
| Pattern | C-x(2)-C-x(15,21)-[FYWHPCR]-H-x(2)-[CH]-x(2)-C-x(2)-C-x(3)-[LIVMF]. |
| Numerical results | |
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| Comments | |
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| Cross-references | |
| UniProtKB/Swiss-Prot | True positive hits:ABLM1_HUMAN (O14639), ABLM1_MOUSE (Q8K4G5), ABLM2_HUMAN (Q6H8Q1), ABLM2_MOUSE (Q8BL65), ABLM2_RAT (Q6KC51), ABLM3_HUMAN (O94929), ABLM3_MOUSE (Q69ZX8), APTE_DROME (P29673), AWH_DROME (Q8IRC7), CRIP1_BOVIN (Q56K04), CRIP1_HUMAN (P50238), CRIP1_MOUSE (P63254), CRIP1_RAT (P63255), CRIP2_BOVIN (Q0VFX8), CRIP2_HUMAN (P52943), CRIP2_MOUSE (Q9DCT8), CRIP2_PONAB (Q5R7Y1), CRIP2_RAT (P36201), CRIP3_HUMAN (Q6Q6R5), CRIP3_MOUSE (Q6Q6R3), CSRP1_BOVIN (Q3MHY1), CSRP1_CHICK (P67966), CSRP1_COTJA (P67967), CSRP1_HUMAN (P21291), CSRP1_MOUSE (P97315), CSRP1_PONAB (Q5RCT4), CSRP1_RAT (P47875), CSRP2_BOVIN (Q32LE9), CSRP2_CHICK (P50460), CSRP2_COTJA (Q05158), CSRP2_HUMAN (Q16527), CSRP2_MOUSE (P97314), CSRP2_RAT (Q62908), CSRP3_BOVIN (Q4U0T9), CSRP3_HUMAN (P50461), CSRP3_MOUSE (P50462), CSRP3_RAT (P50463), ESN_DROME (Q9U1I1), ESN_DROPS (Q292U5), FBLI1_BOVIN (Q1JQB5), FBLI1_HUMAN (Q8WUP2), FBLI1_MOUSE (Q71FD7), FBLI1_PONAB (Q5REN1), FHL1_HUMAN (Q13642), FHL1_MOUSE (P97447), FHL1_RAT (Q9WUH4), FHL2_BOVIN (Q2KI95), FHL2_HUMAN (Q14192), FHL2_MOUSE (O70433), FHL2_RAT (O35115), FHL3_BOVIN (Q3ZBI6), FHL3_HUMAN (Q13643), FHL3_MOUSE (Q9R059), FHL5_BOVIN (Q2YDK0), FHL5_HUMAN (Q5TD97), FHL5_MACFA (Q4R7A4), FHL5_MOUSE (Q9WTX7), FHL5_RAT (Q6AXT1), HM14_CAEEL (P20271), ISL1_CHICK (P50211), ISL1_DANRE (P53405), ISL1_HUMAN (P61371), ISL1_MESAU (P61373), ISL1_MOUSE (P61372), ISL1_RAT (P61374), ISL2A_DANRE (P53406), ISL2A_ONCTS (P53408), ISL2B_DANRE (P53407), ISL2B_ONCTS (P50212), ISL2_CHICK (P53410), ISL2_HUMAN (Q96A47), ISL2_MOUSE (Q9CXV0), ISL2_RAT (P50480), ISL3_ONCTS (P53409), JUB_HUMAN (Q96IF1), JUB_MOUSE (Q91XC0), JUB_RAT (Q5U2Z2), LASP1_BOVIN (Q3B7M5), LASP1_DROME (Q8I7C3), LASP1_HUMAN (Q14847), LASP1_MOUSE (Q61792), LASP1_PONAB (Q5R5W0), LASP1_RABIT (O77506), LASP1_RAT (Q99MZ8), LDB3_HUMAN (O75112), LDB3_MOUSE (Q9JKS4), LHX1_CHICK (P53411), LHX1_DANRE (Q90476), LHX1_HUMAN (P48742), LHX1_MESAU (P63008), LHX1_MOUSE (P63006), LHX1_PANTR (Q5IS44), LHX1_RAT (P63007), LHX1_SAIBB (Q5IS89), LHX1_XENLA (P29674), LHX2_HUMAN (P50458), LHX2_MOUSE (Q9Z0S2), LHX2_RAT (P36198), LHX3_CHICK (P53412), LHX3_DANRE (Q90421), LHX3_HUMAN (Q9UBR4), LHX3_MOUSE (P50481), LHX3_PIG (O97581), LHX3_XENLA (P36200), LHX4_HUMAN (Q969G2), LHX4_MOUSE (P53776), LHX5_DANRE (P52889), LHX5_HUMAN (Q9H2C1), LHX5_MOUSE (P61375), LHX5_RAT (P61376), LHX5_XENLA (P37137), LHX6_HUMAN (Q9UPM6), LHX6_MOUSE (Q9R1R0), LHX8_HUMAN (Q68G74), LHX8_MOUSE (O35652), LHX9_ASTFA (A2I8Z7), LHX9_BOVIN (A0JNI8), LHX9_CHICK (Q90881), LHX9_DANRE (Q1LWV4), LHX9_HUMAN (Q9NQ69), LHX9_MOUSE (Q9WUH2), LHX9_RANRU (A2PZF9), LHX9_RAT (Q80W90), LHX9_XENLA (Q68EY3), LIMA1_HUMAN (Q9UHB6), LIMA1_MOUSE (Q9ERG0), LIMA_DICDI (Q54QR1), LIMB_DICDI (Q54NW4), LIMC1_HUMAN (Q9UPQ0), LIMC1_MOUSE (Q3UH68), LIMC1_XENLA (Q3KQW7), LIMCH_DICDI (Q55GV9), LIMC_DICDI (Q9BIW5), LIMD1_HUMAN (Q9UGP4), LIMD1_MOUSE (Q9QXD8), LIMD2_BOVIN (Q1LZA7), LIMD2_HUMAN (Q9BT23), LIMD2_MOUSE (Q8BGB5), LIMD2_RAT (Q4KM31), LIMD_DICDI (Q9BIW4), LIME_DICDI (O60952), LIMF_DICDI (Q86I44), LIMG_DICDI (Q55DS4), LIMK1_CHICK (Q8QFP8), LIMK1_DROME (Q8IR79), LIMK1_HUMAN (P53667), LIMK1_MOUSE (P53668), LIMK1_RAT (P53669), LIMK1_XENLA (O42565), LIMK2_BOVIN (Q32L23), LIMK2_CHICK (P53666), LIMK2_HUMAN (P53671), LIMK2_MOUSE (O54785), LIMK2_RAT (P53670), LIMKA_DICDI (Q54L00), LIMKB_DICDI (P0CD62), LIMS1_HUMAN (P48059), LIMS1_MOUSE (Q99JW4), LIMS2_BOVIN (Q2KJ33), LIMS2_HUMAN (Q7Z4I7), LIMS2_MOUSE (Q91XD2), LIMS3_HUMAN (Q9HB10), LIM_HALRO (Q25132), LIN11_CAEEL (P20154), LMCD1_BOVIN (Q17QE2), LMCD1_HUMAN (Q9NZU5), LMCD1_MOUSE (Q8VEE1), LMCD1_PIG (Q5PXT2), LMO3_BOVIN (Q2KIA3), LMO3_DANRE (Q503U0), LMO3_HUMAN (Q8TAP4), LMO3_MOUSE (Q8BZL8), LMO3_PONAB (Q5RBW7), LMO3_RAT (Q99MB5), LMO3_XENLA (Q9YH16), LMO41_XENTR (Q5FVB2), LMO42_XENTR (Q6DJ06), LMO4A_XENLA (Q8AW92), LMO4B_XENLA (Q801P0), LMO4_BOVIN (Q3SWZ8), LMO4_HUMAN (P61968), LMO4_MOUSE (P61969), LMO7_HUMAN (Q8WWI1), LMX1A_HUMAN (Q8TE12), LMX1A_MESAU (Q04650), LMX1A_MOUSE (Q9JKU8), LMX1B_CHICK (P53413), LMX1B_HUMAN (O60663), LMX1B_MESAU (Q60564), LMX1B_MOUSE (O88609), LPP_CHICK (Q5F464), LPP_HUMAN (Q93052), LPP_MOUSE (Q8BFW7), LPP_RAT (Q5XI07), LPXN_HUMAN (O60711), LPXN_MOUSE (Q99N69), LRG1_YEAST (P35688), MEC3_CAEBR (P34764), MEC3_CAEEL (P09088), MEC3_CAERE (P34765), MICA1_HUMAN (Q8TDZ2), MICA1_MOUSE (Q8VDP3), MICA2_HUMAN (O94851), MICA2_MOUSE (Q8BML1), MICA3_HUMAN (Q7RTP6), MICA3_MOUSE (Q8CJ19), MILK1_HUMAN (Q8N3F8), MILK1_MOUSE (Q8BGT6), MILK2_HUMAN (Q8IY33), MLP1_DROME (P53777), MLP2_DROME (Q24400), NRAP_HUMAN (Q86VF7), NRAP_MOUSE (Q80XB4), PAXB_DICDI (Q8MML5), PAXI_CHICK (P49024), PAXI_HUMAN (P49023), PAXI_MOUSE (Q8VI36), PAXI_PONAB (Q5R7I1), PAXI_RAT (Q66H76), PDLI1_BOVIN (Q5E9E1), PDLI1_HUMAN (O00151), PDLI1_MOUSE (O70400), PDLI1_RAT (P52944), PDLI2_BOVIN (Q3T0C8), PDLI2_HUMAN (Q96JY6), PDLI2_MACFA (Q9GKU1), PDLI2_MOUSE (Q8R1G6), PDLI2_RAT (Q6AYD6), PDLI3_BOVIN (Q3SYZ8), PDLI3_CHICK (Q9PU47), PDLI3_HUMAN (Q53GG5), PDLI3_MOUSE (O70209), PDLI3_PIG (Q6QGC0), PDLI3_RAT (Q66HS7), PDLI3_XENLA (Q6GLJ6), PDLI4_BOVIN (Q3T005), PDLI4_CHICK (Q9PW72), PDLI4_HUMAN (P50479), PDLI4_MOUSE (P70271), PDLI4_RAT (P36202), PDLI5_HUMAN (Q96HC4), PDLI5_MOUSE (Q8CI51), PDLI5_RAT (Q62920), PDLI7_BOVIN (Q3SX40), PDLI7_CHICK (Q679P3), PDLI7_DANRE (Q6P7E4), PDLI7_HUMAN (Q9NR12), PDLI7_MOUSE (Q3TJD7), PDLI7_RAT (Q9Z1Z9), PDLI7_XENLA (Q6INU3), PIN2_CAEEL (Q19157), PRI1A_XENLA (Q90Z06), PRI1B_XENLA (Q90WV2), PRIC1_AEDAE (Q174I2), PRIC1_ANOGA (Q7QJT4), PRIC1_DROME (A1Z6W3), PRIC1_DROPS (Q292U2), PRIC1_HUMAN (Q96MT3), PRIC1_MOUSE (Q3U5C7), PRIC1_RAT (Q71QF9), PRIC1_XENTR (Q28FG2), PRIC2_HUMAN (Q7Z3G6), PRIC2_MOUSE (Q80Y24), PRIC3_HUMAN (O43900), PRIC3_MOUSE (Q80VL3), PRIC4_HUMAN (Q2TBC4), PXL1_CAEEL (Q09476), PXL1_YEAST (P36166), RBTN1_BOVIN (Q0P5B3), RBTN1_DANRE (Q8JFQ2), RBTN1_HUMAN (P25800), RBTN1_MOUSE (Q924W9), RBTN1_XENLA (Q3B8H4), RBTN2_BOVIN (Q1LZ94), RBTN2_DANRE (Q9PTJ3), RBTN2_HUMAN (P25791), RBTN2_MOUSE (P25801), RBTN2_XENLA (Q90XH3), RBTN2_XENTR (Q5M8V8), RGA1_SCHPO (O43052), RGA1_YEAST (P39083), RGA2_YEAST (Q06407), RGA3_SCHPO (O14014), RGA4_SCHPO (O74360), SCEL_HUMAN (O95171), SCEL_MOUSE (Q9EQG3), SF3_HELAN (P29675), TES_AOTNA (Q07DW1), TES_ATEAB (Q00PK1), TES_ATEGE (Q09YL5), TES_BOVIN (Q2YDE9), TES_CALJA (Q2QLG8), TES_CALMO (Q2QLC3), TES_CANFA (A0M8U6), TES_CERAE (Q2IBA3), TES_CHICK (Q90YH9), TES_COLGU (Q07DZ4), TES_DASNO (Q07E51), TES_EULMM (Q2IBH0), TES_FELCA (A0M8S5), TES_HORSE (Q2QLB2), TES_HUMAN (Q9UGI8), TES_HYLLE (Q07DY3), TES_LOXAF (Q108U9), TES_MICMU (Q2QL92), TES_MONDO (Q2QLA1), TES_MOUSE (P47226), TES_MUNMU (Q09YK3), TES_MUNRE (Q07DX3), TES_MUSPF (Q07E27), TES_NEONE (Q07E40), TES_OTOGA (Q2QLH9), TES_PANTR (Q2QLF4), TES_PAPAN (A0M8R4), TES_PIG (Q2QLE3), TES_PONAB (Q5RC52), TES_RABIT (Q09YN8), TES_RAT (Q2LAP6), TES_RHIFE (Q2IBC3), TES_SAIBB (Q09YI0), TES_SHEEP (Q09YJ2), TES_XENLA (Q7ZXE9), TES_XENTR (Q6DIR5), TGFI1_BOVIN (Q3MHZ4), TGFI1_HUMAN (O43294), TGFI1_MOUSE (Q62219), TGFI1_RAT (Q99PD6), TGFI1_XENLA (Q2TCH4), TRIP6_BOVIN (Q3SX26), TRIP6_HUMAN (Q15654), TRIP6_MOUSE (Q9Z1Y4), UNC97_CAEEL (P50464), WTIP_DANRE (A8DZE6), WTIP_HUMAN (A6NIX2), WTIP_MOUSE (Q7TQJ8), WTIP_XENLA (A9LS46), XIRP2_MOUSE (Q4U4S6), Y1927_ARATH (P0C7Q8), Y6787_DICDI (Q55BI0), YOCC_SCHPO (O74398), ZN185_HUMAN (O15231), ZN185_MOUSE (Q62394), ZYX_CHICK (Q04584), ZYX_HUMAN (Q15942), ZYX_MOUSE (Q62523), ZYX_XENLA (A5H447), ZYX_XENTR (Q0VA45)False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): ADCE_DICDI (Q55GN8), LASP1_CAEEL (P34416), YD266_YEAST (Q05580), YJ01_SCHPO (Q76PD2)`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences): LASP1_PIG (P80171)False positive hits (sequences which do not belong to the set under consideration): YEMC_SCHPO (O14033)Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view]
[Clustal format, color]
[Clustal format, plain text]
[Fasta format]
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| PDB [Detailed view] | 1A7I; 1B8T; 1CTL; 1CXX; 1G47; 1IBI; 1IML; 1J2O; 1M3V; 1NYP; 1QLI; 1RUT; 1U5S; 1V6G; 1WIG; 1WYH; 1X3H; 1X4K; 1X4L; 1X61; 1X62; 1X63; 1X64; 1X68; 1X6A; 2CO8; 2COR; 2CU8; 2CUP; 2CUQ; 2CUR; 2D8X; 2D8Y; 2D8Z; 2DFY; 2DJ7; 2DLO; 2EGQ; 2EHE; 2JTN; 2KBX; 2O10; 2O13; 2RGT; 3F6Q; |
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