PROSITE entry PS00472
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General information about the entry
Entry name [info] | SMALL_CYTOKINES_CC |
Accession [info] | PS00472 |
Entry type [info] | PATTERN |
Date [info] |
01-MAY-1991 CREATED;
01-APR-2006 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00434 |
Name and characterization of the entry
Description [info] | Small cytokines (intercrine/chemokine) C-C subfamily signature. |
Pattern [info] |
C-C-[LIFYTRQ]-x(5,8)-[LIR]-x(4)-[LIVMFA]-x(2)-[FYWECI]-x(5,8)-C-x(3,4)- [SAG]-[LIVM](2)-[FL]-x(7,9)-C-[STAV]. |
Numerical results [info]
Total number of hits | 92 in 92 different sequences |
Number of true positive hits | 92 in 92 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 14 |
Number of 'partial' sequences | 1 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 86.79 % |
Comments [info]
Taxonomic range [info] | Eukaryotes, Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Site [info] | disulfide at position 1 |
Site [info] | disulfide at position 2 |
Site [info] | disulfide at position 11 |
Site [info] | disulfide at position 17 |
Version [info] | 2 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
92 sequences
CC4L_HUMAN (Q8NHW4), CCL11_BOVIN (Q9TTS6), CCL11_CAVPO (P80325), CCL11_HORSE (Q9TTQ4), CCL11_HUMAN (P51671), CCL11_MACMU (Q8MIT7), CCL11_MOUSE (P48298), CCL11_RAT (P97545), CCL12_MOUSE (Q62401), CCL13_CANLF (Q68Y88), CCL13_HUMAN (Q99616), CCL14_HUMAN (Q16627), CCL15_HUMAN (Q16663), CCL16_HUMAN (O15467), CCL17_CANLF (Q95N01), CCL17_FELCA (Q8I021), CCL17_HUMAN (Q92583), CCL17_MACMU (Q8HYP9), CCL17_MOUSE (Q9WUZ6), CCL17_RAT (Q9ERE0), CCL18_HUMAN (P55774), CCL18_MACMU (Q8HYP8), CCL19_HUMAN (Q99731), CCL19_MOUSE (O70460), CCL1_HUMAN (P22362), CCL1_MOUSE (P10146), CCL20_BOVIN (Q8SQB1), CCL20_HUMAN (P78556), CCL20_MOUSE (O89093), CCL22_HUMAN (O00626), CCL22_MOUSE (O88430), CCL23_HUMAN (P55773), CCL23_MACMU (Q8HYP4), CCL24_MOUSE (Q9JKC0), CCL25_CANLF (Q68A93), CCL26_CANLF (Q64H35), CCL26_HUMAN (Q9Y258), CCL28_CANLF (Q68A91), CCL28_HUMAN (Q9NRJ3), CCL2_BOVIN (P28291), CCL2_CANLF (P52203), CCL2_CAVPO (Q08782), CCL2_HORSE (Q9TTQ3), CCL2_HUMAN (P13500), CCL2_MACFA (P61274), CCL2_MACMU (P61275), CCL2_MOUSE (P10148), CCL2_PIG(P42831), CCL2_PONAB (Q5RA36), CCL2_RABIT (P28292), CCL2_RAT(P14844), CCL3_BOVIN (Q8SQA6), CCL3_CANLF (Q68A92), CCL3_HUMAN (P10147), CCL3_MACMU (Q8HYQ3), CCL3_MOUSE (P10855), CCL3_PANTR (Q5I1Z0), CCL3_RAT(P50229), CCL4_BOVIN (Q17QA1), CCL4_CANLF (Q68AZ0), CCL4_CHICK (Q90826), CCL4_HUMAN (P13236), CCL4_MACMU (Q8HYQ2), CCL4_MOUSE (P14097), CCL4_PIG(Q711P4), CCL4_RABIT (P46632), CCL4_RAT(P50230), CCL5_BOVIN (O97919), CCL5_CANLF (Q8HYS0), CCL5_CAVPO (P97272), CCL5_FELCA (Q8SQ40), CCL5_HORSE (Q8MKD0), CCL5_HUMAN (P13501), CCL5_MACMU (Q8HYQ1), CCL5_MOUSE (P30882), CCL5_RAT(P50231), CCL5_SIGHI (Q91ZL1), CCL6_MOUSE (P27784), CCL6_RAT(Q68FP3), CCL7_HUMAN (P80098), CCL7_MOUSE (Q03366), CCL7_RAT(Q9QXY8), CCL8_BOVIN (Q09141), CCL8_CANLF (Q68AY9), CCL8_HUMAN (P80075), CCL8_MOUSE (Q9Z121), CCL8_PIG(P49873), CCL9_MOUSE (P51670), CL3L1_HUMAN (P16619), MCPB_BOVIN (P80343), REG1_BOVIN (P82943), VMI2_HHV8P (Q98157)» more
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UniProtKB/Swiss-Prot False negative sequences |
14 sequences
CC21A_MOUSE (P84444), CC21B_MOUSE (P86792), CC21C_MOUSE (P86793), CCL20_RAT (P97884), CCL21_HUMAN (O00585), CCL21_MACMU (Q8HYP5), CCL24_CANLF (Q68Y86), CCL24_HUMAN (O00175), CCL25_HUMAN (O15444), CCL25_MOUSE (O35903), CCL25_PIG (Q4PR21), CCL27_HUMAN (Q9Y4X3), CCL27_MOUSE (Q9Z1X0), CCL28_MOUSE (Q9JIL2)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
CCL5_PIG(Q29288) |
PDB [Detailed view] |
111 PDB
1B3A; 1B50; 1B53; 1BO0; 1CM9; 1DOK; 1DOL; 1DOM; 1DON; 1EL0; 1EOT; 1ESR; 1G2S; 1G2T; 1G91; 1HA6; 1HFG; 1HFN; 1HHV; 1HRJ; 1HUM; 1HUN; 1M8A; 1ML0; 1NCV; 1NR2; 1NR4; 1RTN; 1RTO; 1U4L; 1U4M; 1U4P; 1U4R; 1VMP; 2BDN; 2EOT; 2FFK; 2FHT; 2FIN; 2FJ2; 2HCC; 2HCI; 2JYO; 2L9H; 2MP1; 2MPM; 2NZ1; 2Q8R; 2Q8T; 2RA4; 2VXW; 2X69; 2X6G; 2X6L; 3FPU; 3H44; 3IFD; 3KBX; 3TN2; 4DN4; 4MHE; 4OIJ; 4OIK; 4R8I; 4RA8; 4RAL; 4RWS; 4ZK9; 4ZKB; 4ZKC; 4ZLT; 5CMD; 5COR; 5COY; 5D65; 5DNF; 5L2U; 5LTL; 5UIW; 5UR7; 5WK3; 5YAM; 6AEZ; 6C6D; 6CWS; 6FGP; 6STK; 6WWZ; 7F1Q; 7F1R; 7F1T; 7O7F; 7S4N; 7S58; 7S59; 7S5A; 7SCS; 7SCT; 7SCU; 7SCV; 7SO0; 7STA; 7T1E; 7VL9; 7VLA; 7XA3; 8FJ0; 8FJ2; 8FK6; 8FK8; 8SKK » more |