PROSITE entry PS00446
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PURL: https://purl.expasy.org/prosite/signature/PS00446
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General information about the entry
| Entry name [info] | RNA_POL_D_30KD |
| Accession [info] | PS00446 |
| Entry type [info] | PATTERN |
| Date [info] |
01-MAY-1991 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00411 |
Name and characterization of the entry
| Description [info] | RNA polymerases D / 30 to 40 Kd subunits signature. |
| Pattern [info] |
N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x- [LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV]. |
Numerical results [info]
| Total number of hits | 44 in 44 different sequences |
| Number of true positive hits | 44 in 44 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 6 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 88.00 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
44 sequences
CNJC_TETTH (P16925), NRPB3_ARATH (Q39211), RPAC1_BOVIN (Q32L22),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
6 sequences
RPB3_DICDI (Q54DH7), RPO3_METS3 (A5UN55), RPO3_NATPD (Q3IQT6),» more |
| PDB [Detailed view] |
337 PDB
1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; » more |