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PROSITE entry PS00430


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PURL: https://purl.expasy.org/prosite/signature/PS00430

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General information about the entry

Entry name [info] TONB_DEPENDENT_REC_1
Accession [info] PS00430
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00354
Associated ProRule [info] PRU10143

Name and characterization of the entry

Description [info] TonB-dependent receptor (TBDR) proteins signature 1.
Pattern [info] 
<x(10,115)-[DENF]-[ST]-[LIVMF]-[LIVSTEQ]-V-{AGPN}-[AGP]-[STANEQPK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 652 in 652 different sequences
Number of true positive hits 54 in 54 different sequences
Number of 'unknown' hits 5 in 5 different sequences
Number of false positive hits 593 in 593 different sequences
Number of false negative sequences 65
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 8.35 %
Recall (true positives / (true positives + false negatives)) 45.38 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 54 sequences 

BTUB_CITFR  (O52903), BTUB_CROS8  (A7ML93), BTUB_ECO24  (A7ZUI6),
» more

UniProtKB/Swiss-Prot
False negative sequences		 65 sequences 

BFRD_BORPE  (P81549), BHUA_BRUA2  (Q2YJB2), BHUA_BRUAB  (Q576D7),
» more

UniProtKB/Swiss-Prot
'Unknown' sequences		 5 sequences 

FANCM_DROME (Q9VDA0), GB_VZVD (P09257), GB_VZVO (Q4JR05),
» more

UniProtKB/Swiss-Prot
False positive sequences		 593 sequences 

A1I3_RAT(P14046), A2MG_BOVIN  (Q7SIH1), A2MG_HUMAN  (P01023),
» more

PDB
[Detailed view]		 17 PDB

1FEP; 1KMO; 1KMP; 1PNZ; 1PO0; 1PO3; 1RH1; 1ZZV; 2A02; 2D1U; 3V89; 3V8X;
» more