PROSITE entry PS00398
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PURL: https://purl.expasy.org/prosite/signature/PS00398
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General information about the entry
| Entry name [info] | RECOMBINASES_2 |
| Accession [info] | PS00398 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00334 |
Name and characterization of the entry
| Description [info] | Site-specific recombinases signature 2. |
| Pattern [info] |
G-[DE]-x(2)-[LIVM]-{E}-x-{V}-[LIVM]-[DT]-R-[LIVM]-[GSA].
|
Numerical results [info]
| Total number of hits | 37 in 37 different sequences |
| Number of true positive hits | 32 in 32 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 8 |
| Number of 'partial' sequences | 1 |
| Precision (true positives / (true positives + false positives)) | 86.49 % |
| Recall (true positives / (true positives + false negatives)) | 80.00 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
32 sequences
BIN3_STAAU (P20384), BINL_STAAU (P18358), BINR_STAAU (P19241),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
8 sequences
CISA_BACSU (P17867), ISTA_PSEAI (P15025), TNR6_ENTFC (Q06237),» more |
| UniProtKB/Swiss-Prot 'Partial' sequences |
1 sequence
PINH_ECOLI (P76611) |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
ABCE_ASPFU (Q4WA92), FOLD_ALCBS (Q0VQ92), KMT2D_HUMAN (O14686),» more |
| PDB [Detailed view] |
18 PDB
1GDR; 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2R0Q; 2RSL; 3PKZ; 3UJ3; 4M6F; » more |