PROSITE entry PS00388

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PURL: https://purl.expasy.org/prosite/signature/PS00388

Direct ScanProsite submission

General information about the entry

Entry name [info]	PROTEASOME_ALPHA_1
Accession [info]	PS00388
Entry type [info]	PATTERN
Date [info]	01-NOV-1990 CREATED; 01-JUL-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00326

Name and characterization of the entry

Description [info]	Proteasome alpha-type subunits signature.
Pattern [info]	[FYNAGS]-x(4)-[STNLV]-x-[FYW]-S-[PDS]-x(0,1)-G-[RKHDS]-x(2)-Q-[LIVA]- [DENR]-[YH]-[GSAD]-x(2)-[GSAG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	174 in 174 different sequences
Number of true positive hits	174 in 174 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	64
Number of 'partial' sequences	1

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	73.11 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	174 sequences PSA1A_ARATH (P34066), PSA1B_ARATH (O23712), PSA1_BOVIN (Q3T0X5), » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	64 sequences PSA1_RHOER (Q53080), PSA2_RHOER (Q53084), PSA3_ENCCU (Q8SRU7), » more
UniProtKB/Swiss-Prot 'Partial' sequences	1 sequence PSMA_HALDO (P84799)
PDB [Detailed view]	506 PDB 1FNT; 1G0U; 1G65; 1IRU; 1J2P; 1JD2; 1PMA; 1RYP; 1YA7; 1YAR; 1YAU; 1Z7Q; » more