PROSITE entry PS00351
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PURL: https://purl.expasy.org/prosite/signature/PS00351
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General information about the entry
| Entry name [info] | TFIID |
| Accession [info] | PS00351 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00303 |
Name and characterization of the entry
| Description [info] | Transcription factor TFIID repeat signature. |
| Pattern [info] |
Y-x-[PK]-x(2)-[IF]-x(2)-[LIVM](2)-x-[KRH]-x(3)-P-[RKQ]-x(3)-L-[LIVM]-F-x- [STN]-G-[KR]-[LIVMA]-x(3)-G-[TAGL]-[KR]-x(7)-[AGCS]-x(7)-[LIVMF]. |
Numerical results [info]
| Total number of hits | 168 in 97 different sequences |
| Number of true positive hits | 168 in 97 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 7 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 96.00 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes |
| Maximum number of repetitions [info] | 2 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
97 sequences
TBP1_ARATH (P28147), TBP1_ENTH1 (P52653), TBP1_HALVD (D4GZA2),» more
|
| UniProtKB/Swiss-Prot False negative sequences |
7 sequences
TBPL1_BOVIN (Q32LB1), TBPL1_DANRE (Q5U385), TBPL1_HUMAN (P62380),» more |
| PDB [Detailed view] |
154 PDB
1AIS; 1C9B; 1CDW; 1D3U; 1JFI; 1MP9; 1NGM; 1NH2; 1NVP; 1PCZ; 1QN3; 1QN4; » more |