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Entry: PS00330

General information about the entry
Entry nameHEMOLYSIN_CALCIUM
Accession numberPS00330
Entry typePATTERN
DateAPR-1990 (CREATED); APR-1990 (DATA UPDATE); FEB-2010 (INFO UPDATE).
PROSITE DocumentationPDOC00293
Name and characterization of the entry
DescriptionHemolysin-type calcium-binding region signature.
PatternD-x-[LI]-x(4)-G-x-D-x-[LI]-x-G-G-x(3)-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 57.15, total number of sequence entries in that release: 515203.
  • Total number of hits in UniProtKB/Swiss-Prot: 219 hits in 55 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 219 hits in 55 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 98.65 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 17
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ALGE1_AZOVI (Q44494), ALGE2_AZOVI (Q44495), ALGE3_AZOVI (Q44496), 
ALGE4_AZOVI (Q44493), ALGE5_AZOVI (Q44492), ALGE6_AZOVI (Q9ZFH0), 
ALGE7_AZOVI (Q9ZFG9), APRA_PSEAE  (Q03023), CYAA_BORBR  (Q57506), 
CYAA_BORPE  (P15318), FRPA_NEIMB  (Q9K0K9), FRPA_NEIMC  (P55126), 
FRPC_NEIMB  (Q9JYV5), FRPC_NEIMC  (P55127), HLYAC_ECOLX (P09983), 
HLYAP_ECOLX (P08715), HLYA_ACTSU  (Q00951), LIPA_PSEFL  (P26504), 
LIPB_PSEFL  (P41773), LKA11_PASHA (P55118), LKA13_PASHA (Q9EV31), 
LKA14_PASHA (Q9EV33), LKA16_PASHA (Q9EV32), LKA1A_PASHA (P16535), 
LKA1B_PASHA (Q7BHI8), LKA2A_PASHA (Q9EV30), LKA2B_PASHA (P0C081), 
LKA2C_PASHA (P0C082), LKA2D_PASHA (Q9EV29), LKA2E_PASHA (Q9EV27), 
LKA7A_PASHA (P0C084), LKA7B_PASHA (P0C085), LKTA6_PASHA (P0C083), 
LKTA8_PASHA (Q9EV34), LKTA_AGGAC  (P16462), LKTA_MANGL  (Q9ETX2), 
LKTA_PASSP  (P55123), LKTA_PASTR  (P55117), NODO_RHILV  (P15728), 
PAXA_PASAE  (Q9RCG8), PRTA1_PHOLU (Q84F70), PRTA_ERWCH  (Q07295), 
PRTA_PHOAZ  (P82115), PRTA_PHOLL  (Q7N8R3), PRTB_ERWCH  (P16316), 
PRTC_ERWCH  (P16317), PRTG_ERWCH  (Q07162), PRTX_ERWCH  (P19144), 
PRZN_SERMA  (P23694), PRZN_SERME  (P07268), RTX11_ACTPL (P55128), 
RTX12_ACTPL (P55129), RTX2A_ACTPL (P15377), RTX31_ACTPL (P55130), 
RTX32_ACTPL (P55131)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
EGLC_RHIME  (Q9Z3Q2), EXSH_RHIME  (O33680), ZAPA_PROMI  (Q11137)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1AF0; 1AKL; 1GO7; 1GO8; 1JIW; 1K7G; 1K7I; 1K7Q; 1KAP; 1SAT; 1SMP; 1SRP; 2AGM; 3HB2; 3HBU; 3HBV; 3HDA;

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