PROSITE entry PS00196
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General information about the entry
Entry name [info] | COPPER_BLUE |
Accession [info] | PS00196 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00174 |
Name and characterization of the entry
Description [info] | Type-1 copper (blue) proteins signature. |
Pattern [info] |
[GA]-x(0,2)-[YSA]-x(0,1)-[VFY]-{SEDT}-C-x(1,2)-[PG]-x(0,1)-H-x(2,4)-[MQ]. |
Numerical results [info]
Total number of hits | 170 in 169 different sequences |
Number of true positive hits | 90 in 90 different sequences |
Number of 'unknown' hits | 1 |
Number of false positive hits | 79 in 78 different sequences |
Number of false negative sequences | 13 |
Number of 'partial' sequences | 2 |
Precision (true positives / (true positives + false positives)) | 53.25 % |
Recall (true positives / (true positives + false negatives)) | 87.38 % |
Comments [info]
Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
Maximum number of repetitions [info] | 2 |
Site [info] | copper at position 7 |
Site [info] | copper at position 11 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
90 sequences
AMCY_METEA (P04172), AMCY_PARDE (P22364), AMCY_PARVE (P22365), AURA_CHLAA (Q8RMH6), AURB_CHLAA (P27197), AZUP_ACHCY (P19567), AZUP_ALCFA (P04377), AZUP_METEA (P04171), AZUP_PARDE (P80649), AZUP_PARPN (P80401), AZUR1_ALCXX (P56547), AZUR1_METJ (P12334), AZUR2_ALCXX (P56275), AZUR2_METJ (P12335), AZUR_ACHDE (P00280), AZUR_ALCFA (P00281), AZUR_ALCSP (P00279), AZUR_BORBR (P0A321), AZUR_BORPA (P0A322), AZUR_BORPE (P0A320), AZUR_PSEAE (P00282), AZUR_PSECL (P00286), AZUR_PSEDE (P00283), AZUR_PSEFA (P80546), AZUR_PSEFB (P00284), AZUR_PSEFC (P00285), AZUR_PSEPU (P34097), BABL_CUCSA (P00303), BCB1_ARATH (Q07488), BCP_PEA (Q41001), CPC_CUCSA (P29602), H81_NEIGO (P07211), H8_NEIMA(P57025), H8_NEIMB(P57026), H8_NEIMF(P07212), HCY_NATPH (P39442), MAVI_CUCPE (P80728), PLAS1_ARATH (P11490), PLAS1_POPNI (P00299), PLAS1_TOBAC (P35476), PLAS2_ARATH (P42699), PLAS2_POPNI (P11970), PLAS2_TOBAC (P35477), PLAS_ANAVA (P0C178), PLAS_CAPBU (P00294), PLAS_CHLRE (P18068), PLAS_CUCPE (P00292), PLAS_CUCSA (P00293), PLAS_DAUCA (P20422), PLAS_DRYCA (Q7SIB8), PLAS_GINBI (P84338), PLAS_GLOC7 (B7KAE8), PLAS_HORVU (P08248), PLAS_LACSA (P00290), PLAS_MERPE (P00295), PLAS_NOSP7 (B2IVD7), PLAS_NOSS1 (P46444), PLAS_NOSSO (O52830), PLAS_ORYSI (A2Y886), PLAS_ORYSJ (Q0DFC9), PLAS_PEA(P16002), PLAS_PETCR (P17341), PLAS_PHAVU (P00287), PLAS_PHOLA (Q51883), PLAS_PHYPA (Q9SXW9), PLAS_PROHO (P50057), PLAS_RUMOB (P00298), PLAS_SAMNI (P00291), PLAS_SCEFU (P00300), PLAS_SILLB (P07030), PLAS_SOLCR (P00297), PLAS_SOLLC (P17340), PLAS_SOLTU (P00296), PLAS_SPIOL (P00289), PLAS_SYNE7 (P55020), PLAS_SYNJB (Q2JHE1), PLAS_SYNP6 (Q5N4W8), PLAS_SYNY3 (P21697), PLAS_TETOB (P26956), PLAS_TRIV2 (Q3M9H8), PLAS_ULVAR (P13133), PLAS_ULVPE (P56274), PLAS_ULVPR (P07465), PLAS_VICFA (P00288), RUS1_ACIFR (P23742), RUS2_ACIFI (P0C918), RUS_ACIF2 (B7JAQ0), STEL_TOXVR (P00302), UCC1_ARATH (O82081), UMEC_ARMRU (P42849)» more
|
UniProtKB/Swiss-Prot False negative sequences |
13 sequences
AZUP_RHILV (Q52825), AZUR_METFK (Q50400), BABL_ARATH (Q8LG89), BABL_LILLO (P60496), BCB2_ARATH (O80517), BCB3_ARATH (Q96316), BCP1A_MEDTR (G7L0H3), BCP1B_MEDTR (A0A072U307), BCP_PETHY (A0A0M4FTF3), CUPR1_ARTBC (P0DN32), MPAA3_AMBEL (P00304), NO552_SOYBN (Q02917), PLAS_FRIAG (O22646)» more |
UniProtKB/Swiss-Prot 'Partial' sequences |
2 sequences
PLAS_MICAE (P10625), PLAS_THAOC (P84800) |
UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
GABR2_CAEEL (G5ECB2) |
UniProtKB/Swiss-Prot False positive sequences |
78 sequences
4FTAS_STRCT (B6VP39), APOH_BOVIN (P17690), ARGD_RALN1 (Q8XWN8), CCD14_HUMAN (Q49A88), CD59_PAPSP (Q28785), CEPL_CERFI (P81702), DIG1_CAEEL (Q09165), DYH3_MOUSE (Q8BW94), EF121_ARATH (Q9FGC9), EPHA3_DANRE (O13146), F215A_HUMAN (Q9Y5M1), FGFH_NPVOP (O10284), GLGB_MAIZE (Q08047), GPR33_HUMAN (Q49SQ1), GPR33_PANPA (Q49SQ2), GPR33_PANTR (Q49SQ3), ILVC_STAHJ (Q4L7T9), IOLC_PHOPR (Q6LK43), LRP2_PIG(C0HL13), LSS_MOUSE (Q8BLN5), LSS_RAT (P48450), LTP_HCMVA (P16785), LTP_HCMVM (Q6SW84), LTP_HCMVT (D5LX59), LYST_BOVIN (Q9TTK4), LYST_HUMAN (Q99698), LYSX_MYCA1 (A0QHC4), LYSX_MYCPA (Q740J9), MLRP1_ACRMI (B3EWZ5), MLRP2_ACRMI (B3EWZ6), MUC2_MOUSE (Q80Z19), NR1H3_BOVIN (Q5E9B6), NR1H3_HUMAN (Q13133), NR1H3_MOUSE (Q9Z0Y9), NR1H3_RAT (Q62685), NTPPB_PHOPR (Q6LSX6), NTR2_MOUSE (P70310), NTR2_RAT(Q63384), PFL5_SCHPO (Q9URU4), QUEF_NOVAD (Q2G586), RGSL1_ARATH (F4ITM1), RL36_THET2 (Q72I28), RL36_THET8 (Q5SHR2), RL36_THETH (P80256), RL36_TROW8 (Q83I57), RL36_TROWT (Q83G08), S35B2_HUMAN (Q8TB61), S35B2_PONAB (Q5R9A1), SORL_CHICK (Q98930), SORL_HUMAN (Q92673), SORL_MOUSE (O88307), SORL_RABIT (Q95209), SORL_RAT(P0DSP1), STA5A_MOUSE (P42230), SYI_PHOPR (Q6LUL1), THIC_RHOPB (Q216H0), TOP3_STAA3 (Q2FEN5), TOP3_STAA8 (Q2FW03), TOP3_STAAB (P0C2W6), TOP3_STAAC (Q5HDV4), TOP3_STAAM (Q99S17), TOP3_STAAN (Q7A455), TOP3_STAAR (Q6GEH9), TOP3_STAAS (Q6G767), TOP3_STAAW (Q7A075), TOP3_STAEQ (Q5HLZ4), TOP3_STAES (Q8CRF7), TOP3_STAHJ (Q4L8B8), TOP3_STAS1 (Q49ZH2), TRRAP_HUMAN (Q9Y4A5), TRRAP_MOUSE (Q80YV3), U507_LODEL (A5DUP0), UBR3_DANRE (F1QJX5), VPS54_CAEBR (Q61JT8), VPS54_CAEEL (Q22639), XKR8_MOUSE (Q8C0T0), Y2934_KINRD (A6WC59), Y6211_BACAN (Q9X397)» more |
PDB [Detailed view] |
227 PDB
1A3Z; 1A4A; 1A4B; 1A4C; 1A8Z; 1AAC; 1AAJ; 1AAN; 1ADW; 1AG6; 1AIZ; 1AZB; 1AZC; 1AZN; 1AZR; 1AZU; 1B3I; 1BAW; 1BEX; 1BQK; 1BQR; 1BXA; 1BXU; 1BXV; 1BYO; 1BYP; 1CUO; 1CUR; 1DYZ; 1DZ0; 1E30; 1E5Y; 1E5Z; 1E65; 1E67; 1EZL; 1FA4; 1GR7; 1GY1; 1I53; 1ID2; 1ILS; 1IUZ; 1J5C; 1J5D; 1JER; 1JOI; 1JVL; 1JVO; 1JXD; 1JXF; 1JXG; 1JZE; 1JZF; 1JZG; 1JZH; 1JZI; 1JZJ; 1KDI; 1KDJ; 1M9W; 1MDA; 1MG2; 1MG3; 1NIN; 1NWO; 1NWP; 1NZR; 1OOW; 1OV8; 1PAZ; 1PCS; 1PLA; 1PLB; 1PLC; 1PMY; 1PNC; 1PND; 1PY0; 1PZA; 1PZB; 1PZC; 1QHQ; 1RCY; 1RKR; 1T5K; 1TEF; 1TEG; 1TKW; 1TU2; 1UAT; 1URI; 1VLX; 1WS7; 1WS8; 1X9R; 1X9U; 1XB3; 1XB6; 1XB8; 1YLB; 1ZIA; 1ZIB; 2AAN; 2AZA; 2AZU; 2B3I; 2BZ7; 2BZC; 2CAK; 2CBP; 2CCW; 2CJ3; 2FNW; 2FTA; 2GB2; 2GBA; 2GC4; 2GC7; 2GHZ; 2GI0; 2GIM; 2H3X; 2H47; 2HX7; 2HX8; 2HX9; 2HXA; 2I7O; 2I7S; 2IAA; 2IDF; 2IDT; 2IDU; 2J55; 2J56; 2J57; 2JKW; 2JXM; 2MTA; 2OJ1; 2OV0; 2P80; 2PCF; 2PCY; 2PLT; 2Q5B; 2QDV; 2QDW; 2RAC; 2UX6; 2UX7; 2UXF; 2UXG; 2W88; 2W8C; 3AZU; 3BQV; 3C75; 3CVB; 3CVC; 3CVD; 3ERX; 3IBO; 3IN0; 3JTB; 3L45; 3NYK; 3PAZ; 3PCY; 3PLY; 3UGE; 4AZU; 4BWT; 4BWU; 4BWW; 4BXV; 4DP0; 4DP1; 4DP2; 4DP4; 4DP5; 4DP6; 4DP7; 4DP8; 4DP9; 4DPA; 4DPB; 4DPC; 4HZ1; 4JKN; 4KO7; 4KOB; 4P5R; 4P5S; 4PCY; 4R0O; 4RH4; 4YL4; 5AZU; 5I26; 5I28; 5PCY; 5SYD; 5WV4; 5X31; 5XMO; 5Y23; 5YSG; 5YW3; 5Z0X; 5ZTD; 6AKN; 6GYI; 6IAV; 6IFP; 6L1V; 6PCY; 6YEZ; 6ZOO; 7PCY; 7TNC; 7U2F; 7YGI; 7ZQE; 8PAZ; 9PCY » more |