PROSITE entry PS00116
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PURL: https://purl.expasy.org/prosite/signature/PS00116
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General information about the entry
Entry name [info] | DNA_POLYMERASE_B |
Accession [info] | PS00116 |
Entry type [info] | PATTERN |
Date [info] |
01-APR-1990 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC00107 |
Name and characterization of the entry
Description [info] | DNA polymerase family B signature. |
Pattern [info] |
[YA]-[GLIVMSTAC]-D-T-D-[SG]-[LIVMFTC]-{LA}-[LIVMSTAC]. |
Numerical results [info]
Total number of hits | 165 in 165 different sequences |
Number of true positive hits | 148 in 148 different sequences |
Number of 'unknown' hits | 2 in 2 different sequences |
Number of false positive hits | 15 in 15 different sequences |
Number of false negative sequences | 26 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 90.80 % |
Recall (true positives / (true positives + false negatives)) | 85.06 % |
Comments [info]
Taxonomic range [info] | Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses |
Maximum number of repetitions [info] | 1 |
Version [info] | 1 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
148 sequences
DPO1_KLULA (P09804), DPO2_ECOLI (P21189), DPO2_KLULA (P05468),» more
|
UniProtKB/Swiss-Prot False negative sequences |
26 sequences
DPOE_ASPFU (Q4WXH8), DPOE_CANGA (Q6FNY7), DPOE_CRYNB (P0CN27),» more |
UniProtKB/Swiss-Prot 'Unknown' sequences |
2 sequences
LTP_VZVD(P09278), LTP_VZVO(Q4JQX9) |
UniProtKB/Swiss-Prot False positive sequences |
15 sequences
ACDG1_METTE (Q50539), ACDG2_METTE (Q9C4Z0), ACDG_METAC (Q8TH44),» more |
PDB [Detailed view] |
278 PDB
1CLQ; 1D5A; 1IG9; 1IH7; 1Q8I; 1Q9X; 1Q9Y; 1QHT; 1QQC; 1S5J; 1TGO; 1WAF; » more |