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PROSITE entry PS00039


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PURL: https://purl.expasy.org/prosite/signature/PS00039

Direct ScanProsite submission
General information about the entry

Entry name [info] DEAD_ATP_HELICASE
Accession [info] PS00039
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED;
01-NOV-1995 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00039

Name and characterization of the entry

Description [info] DEAD-box subfamily ATP-dependent helicases signature.
Pattern [info]
[LIVMF](2)-D-E-A-D-[RKEN]-x-[LIVMFYGSTN].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 1'007 in 1'007 different sequences
Number of true positive hits 928 in 928 different sequences
Number of 'unknown' hits 0
Number of false positive hits 79 in 79 different sequences
Number of false negative sequences 245
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 92.15 %
Recall (true positives / (true positives + false negatives)) 79.11 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
928 sequences

CETN1_TOXGM (A0A125YHX7), CETN4_MOUSE (Q8K4K1), CGH1_CAEEL  (Q95YF3), 
» more

UniProtKB/Swiss-Prot
False negative sequences
245 sequences

CSHB_BACSU  (P54475), DBP10_CRYNB (P0CR07), DBP10_CRYNJ (P0CR06), 
» more

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

RH1_CATRO   (P85441), RH3_HELAN   (P85199)

		
UniProtKB/Swiss-Prot
False positive sequences
79 sequences

CATR_SCHDU  (Q06827), CATR_SPESI  (P43645), CATR_TETST  (P43646), 
» more

PDB
[Detailed view]
190 PDB

1FUU; 1HV8; 1QDE; 1QVA; 1S2M; 1VEC; 2DB3; 2G9N; 2HXY; 2HYI; 2I4I; 2J0Q;
» more