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PDOC00118

Pancreatic ribonuclease family signature

Description:

Pancreatic ribonucleases (EC 3.1.27.5) are pyrimidine-specific endonucleases present in high quantity in the pancreas of a number of mammalian taxa and of a few reptiles [1,2]. As shown in the following schematic representation of the sequence of pancreatic RNases there are four conserved disulfide bonds and three amino acid residues involved in the catalytic activity.

                        +---------------------------+
                        |        +------------------|------+
                        |        |                  |      |
     xxxxx#xxxxxxCxxxxxxC#xxxxxxxCxxCxxxCxxxxxCxxxxxCxxxxxxCxxx#xxx
                 |      ****        |   |     |
                 |                  +---+     |
                 +----------------------------+
'C': conserved cysteine involved in a disulfide bond.
'#': active site residue.
'*': position of the pattern.

A number of other proteins belongs to the pancreatic RNAse family and these are listed below.

  • Bovine seminal vesicle and bovine brain ribonucleases.
  • The kidney non-secretory ribonucleases (also known as eosinophil-derived neurotoxin (EDN) [3]).
  • Liver-type ribonucleases [4].
  • Angiogenin, which induces vascularization of normal and malignant tissues. It abolishes protein synthesis by specifically hydrolyzing cellular tRNAs.
  • Eosinophil cationic protein (ECP) [5], a cytotoxin and helminthotoxin with ribonuclease activity.
  • Frog liver ribonuclease and frog sialic acid-binding lectin [6].

The signature pattern we developed for these proteins includes five conserved residues: a cysteine involved in a disulfide bond, a lysine involved in the catalytic activity and three other residues important for substrate binding.

Last update:

October 1993 / Text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RNASE_PANCREATIC, PS00127Pancreatic ribonuclease family signature  (PATTERN)
Consensus pattern: C - K - x(2) - N - T - F
C is involved in a disulfide bond] [K is an active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 4
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00127
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00127
Scan Swiss-Prot/TrEMBL entries against PS00127
view ligand binding statistics
Matching PDB structures: 11BA 11BG 1A2W 1A4Y ... [ALL]

References:

1 AuthorsBeintema J.J., Schuller C., Irie M., Carsana A.
TitleMolecular evolution of the ribonuclease superfamily.
SourceProg. Biophys. Mol. Biol. 51:165-192(1988).
PubMed ID3074337
2 AuthorsBeintema J.J., van der Laan J.M.
TitleComparison of the structure of turtle pancreatic ribonuclease with those of mammalian ribonucleases.
SourceFEBS Lett. 194:338-342(1986).
PubMed ID3940901
3 AuthorsRosenberg H.F., Tenen D.G., Ackerman S.J.
TitleMolecular cloning of the human eosinophil-derived neurotoxin: a member of the ribonuclease gene family.
SourceProc. Natl. Acad. Sci. U.S.A. 86:4460-4464(1989).
PubMed ID2734298
4 AuthorsHofsteenge J., Matthies R., Stone S.R.
TitlePrimary structure of a ribonuclease from porcine liver, a new member of the ribonuclease superfamily.
SourceBiochemistry 28:9806-9813(1989).
PubMed ID2611266
5 AuthorsRosenberg H.F., Ackerman S.J., Tenen D.G.
TitleHuman eosinophil cationic protein. Molecular cloning of a cytotoxin and helminthotoxin with ribonuclease activity.
SourceJ. Exp. Med. 170:163-176(1989).
PubMed ID2473157
6 AuthorsLewis M.T., Hunt L.T., Barker W.C.
TitleStriking sequence similarity among sialic acid-binding lectin, pancreatic ribonucleases, and angiogenin: possible structural and functional relationships.
SourceProtein Seq. Data Anal. 2:101-105(1989).
PubMed ID2710786

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