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| PDOC00118 |
Pancreatic ribonuclease family signature
Description:
Pancreatic ribonucleases (EC 3.1.27.5) are pyrimidine-specific endonucleases
present in high quantity in the pancreas of a number of mammalian taxa and of
a few reptiles [1,2]. As shown in the following schematic representation of
the sequence of pancreatic RNases there are four conserved disulfide bonds and
three amino acid residues involved in the catalytic activity.
+---------------------------+
| +------------------|------+
| | | |
xxxxx#xxxxxxCxxxxxxC#xxxxxxxCxxCxxxCxxxxxCxxxxxCxxxxxxCxxx#xxx
| **** | | |
| +---+ |
+----------------------------+
'C': conserved cysteine involved in a disulfide bond.
'#': active site residue.
'*': position of the pattern.
A number of other proteins belongs to the pancreatic RNAse family and these
are listed below.
- Bovine seminal vesicle and bovine brain ribonucleases.
- The kidney non-secretory ribonucleases (also known as eosinophil-derived
neurotoxin (EDN) [3]).
- Liver-type ribonucleases [4].
- Angiogenin, which induces vascularization of normal and malignant tissues.
It abolishes protein synthesis by specifically hydrolyzing cellular tRNAs.
- Eosinophil cationic protein (ECP) [5], a cytotoxin and helminthotoxin with
ribonuclease activity.
- Frog liver ribonuclease and frog sialic acid-binding lectin [6].
The signature pattern we developed for these proteins includes five conserved
residues: a cysteine involved in a disulfide bond, a lysine involved in the
catalytic activity and three other residues important for substrate binding.
Last update:
October 1993 / Text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| RNASE_PANCREATIC, PS00127; Pancreatic ribonuclease family signature (PATTERN) |
| Consensus pattern: |
C - K - x(2) - N - T - F
C is involved in a disulfide bond] [K is an active site residue |
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
4 |
|
|
|
| Matching PDB structures:
11BA 11BG 1A2W 1A4Y ... [ALL] |
References:
| 1 |
Authors | Beintema J.J., Schuller C., Irie M., Carsana A. |
| Title | Molecular evolution of the ribonuclease superfamily. |
| Source | Prog. Biophys. Mol. Biol. 51:165-192(1988). |
| PubMed ID | 3074337 |
| 2 |
Authors | Beintema J.J., van der Laan J.M. |
| Title | Comparison of the structure of turtle pancreatic ribonuclease with those of mammalian ribonucleases. |
| Source | FEBS Lett. 194:338-342(1986). |
| PubMed ID | 3940901 |
| 3 |
Authors | Rosenberg H.F., Tenen D.G., Ackerman S.J. |
| Title | Molecular cloning of the human eosinophil-derived neurotoxin: a member of the ribonuclease gene family. |
| Source | Proc. Natl. Acad. Sci. U.S.A. 86:4460-4464(1989). |
| PubMed ID | 2734298 |
| 4 |
Authors | Hofsteenge J., Matthies R., Stone S.R. |
| Title | Primary structure of a ribonuclease from porcine liver, a new member of the ribonuclease superfamily. |
| Source | Biochemistry 28:9806-9813(1989). |
| PubMed ID | 2611266 |
| 5 |
Authors | Rosenberg H.F., Ackerman S.J., Tenen D.G. |
| Title | Human eosinophil cationic protein. Molecular cloning of a cytotoxin and helminthotoxin with ribonuclease activity. |
| Source | J. Exp. Med. 170:163-176(1989). |
| PubMed ID | 2473157 |
| 6 |
Authors | Lewis M.T., Hunt L.T., Barker W.C. |
| Title | Striking sequence similarity among sialic acid-binding lectin, pancreatic ribonucleases, and angiogenin: possible structural and functional relationships. |
| Source | Protein Seq. Data Anal. 2:101-105(1989). |
| PubMed ID | 2710786 |
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