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Publications in 2002

I. Articles in journals with editorial policy

  1. Bienvenut WV, Hoogland C, Greco A, Heller M, Gasteiger E, Appel RD, Diaz JJ, Sanchez JC, Hochstrasser DF. Hydrogen/deuterium exchange for higher specificity of protein identification by peptide mass fingerprinting. Rapid Commun Mass Spectrom 2002; 16: 616-626.

  2. Gay S, Binz PA, Hochstrasser DF, Appel RD. Peptide mass fingerprinting peak intensity prediction: extracting knowledge from spectra. Proteomics 2002; 2: 1374-1391.

  3. Geissbuhler A, Lovis C, Spahni S, Appel RD, Ratib O, Boyer C, Hochstrasser DF, Baud R. A humanist's legacy in medical informatics: visions and accomplishments of Professor Jean-Raoul Scherrer. Methods Inf Med 2002; 41: 237-242.

  4. Hochstrasser DF, Sanchez JC, Appel RD. Proteomics and its trends facing nature's complexity. Proteomics 2002; 2: 807-812.

  5. Müller M, Gras R, Binz PA, Hochstrasser DF, Appel RD. Molecular scanner experiment with human plasma: improving protein identification by using intensity distributions of matching peptide masses. Proteomics 2002; 2: 1413-1425.

  6. Müller M, Gras R, Appel RD, Bienvenut WV, Hochstrasser DF. Visualization and analysis of molecular scanner peptide mass spectra. J Am Soc Mass Spectrom 2002; 13: 221-231.

  7. Vargas AR, Balderrama JR, Hoogland C, Gasteiger E, Ivanyi I, Bairoch A, Appel RD, Hochstrasser DF. El nuovo servidor Latinoamericano de biologia molecular de la UCB: bo.expasy.org. Acta Nova 2002; 2: 72-81.

II. Books, book chapters & guest edition

  1. Appel RD, Bairoch A. Special issue on Applications of Bioinformatics to Mass Spectrometry (Guest Edition). Proteomics, Vol.2, No. 10; 2002.

  2. Gay S. Datamining in proteomics: extracting knowledge from peptide mass fingerprinting spectra. Thèse de doctorat ès sciences, mention interdisciplinaire (Université de Genève).; 2002.

  3. Palagi PM, Quadroni M, Rossier J, Sanchez JC, Stöcklin R. Proceedings of the Swiss Proteomics Society, 2002 Congress, Applied Proteomics (Editors). Lausanne, Switzerland: FontisMedia Publishers; 2002.

  4. Sanchez JC, Palagi PM, Stöcklin R. Special Issue on the Proceedings of the 1st Annual Conference of the Swiss Proteomics Society (Guest Editors). Proteomics vol.2, n°7; 2002.

IV. Conference proceedings

  1. Bologna G, Appel RD. A comparaison study on protein fold recognition. 9th International Conference on Neural Information Processing. Singapore: Nov. 2002.

  2. Bologna G. On the validation of the DIMLP Neural Network. FLAIRS'02. Florida: Nov. 2002.

V. Abstracts and posters

  1. Appel RD, Hernandez P, Tuloup M, Walther D, Gras R, Müller M, Hoogland C, Binz PA, Corthals GL, Sanchez JC, Hochstrasser DF. New developments in proteomatics at the Swiss Institute of Bioinformatics. First Annual HUPO Congress. Versailles, France: Sept. 2002.

  2. Binz PA, Gay S, Hochstrasser DF, Appel RD. Knowledge Discovery to understand and predict peptide mass fingerprinting spectra. First Annual HUPO Congress. Versailles, France: Sept. 2002.

  3. Binz PA, Müller M, Hoogland C, Walther D, Gay S, Gras R, Bienvenut WV, Pasquarello C, Paesano S, Corthals G, Sanchez JC, Bairoch A, Hochstrasser DF, Appel RD. The Synergy between Bioinformatics and Proteomics Research. Danish Society for Biochemistry and Molecular Biology. Oct. 2002.

  4. Bologna G, Veuthey AL, Appel RD. N-terminal myristoylation predictions by neural network ensembles. 5th Siena 2D electrophoresis meeting. Siena, Italy: Sept. 2002.

  5. Corthals G, Schmidt G, Scherl A, Pasquarello C, Bienvenut W, Binz PA, Walther D, Voordijk S, Appel RD, Hochstrasser DF, Sanchez JC. Proteomics: tools and applications. Association of Clinical Biochemists (UK), Pharmacogenomics Meeting. Cambridge, UK: Sept. 2002.

  6. Gras R, Müller M, Hernandez D, Hernandez P, Zangger N, Palagi P, Binz PA, Appel RD. Cooperative metaheuristic for proteomics. Bioinformatics Workshop ISMIS. Lyon: 2002.

  7. Gras R, Müller M, Hernandez D, Hernandez P, Zangger N, Palagi P, Binz PA, Lisacek F, Appel RD. New approaches of computational proteomics. JOBIM 2002. 2002: 143-147.

  8. Hernandez D, Gras R, Lisacek F, Appel RD. MoDEL: Inférence de motifs avec un algorithme évolutionniste. JOBIM. 2002.

  9. Hernandez P, Gras R, Appel RD. Ant Colony Optimization Metaheuristic Applied to Automated Protein Identification from Tandem Mass Spectrometric Data. Second International Workshop on "AGENTS IN BIOINFORMATICS". Bologna, Italy: July 2002.

  10. Hernandez P, Gras R, Frey JP, Appel RD. Automated Protein Identification from Tandem Mass Spectrometric Data Using Bio-Inspired Algorithms. Congress of the Swiss Proteomics Society. Lausanne: Dec. 2002: 81-86.

  11. Hernandez P, Gras R, Appel RD. Automated Protein Identification from Tandem Mass Spectrometric Data Using Bio-Inspired Algorithms. 5th Siena 2D electrophoresis meeting. Siena, Italy: Sept. 2002.

  12. Hochstrasser DF, Sanchez JC, Corthals G, Binz PA, Müller M, Walther D, Appel RD. Bioinformatics in proteomics. International Conference "Genomics, Proteomics and Bioinformatics for Medicine". Moscow: June 2002.

  13. Hochstrasser DF, Sanchez JC, Scherl A, Corthals G, Appel RD. Proteomics: three approaches. Endoderm. Arolla, Switzerland: Aug. 2002.

  14. Mostaguir K, Hoogland C, Appel RD. Migration des bases de données de gels 2-DE vers un format relationnel. JOBIM. 2002.

  15. Mostaguir K, Hoogland C, Binz PA, Appel RD. The Make 2D-DB II Package - Conversion of federated 2-DE gel databases into a relational format and interconnection of distributed databases. 5th Siena 2D electrophoresis meeting. Siena, Italy: Sept. 2002.

  16. Müller M, Gras R, Bienvenut WV, Binz PA, Pasquarello C, Hochstrasser DF, Appel RD. Using Peptide Signal Intensity Distributions for a Better Interpretation of Molecular Scanner Data. 5th Siena 2D electrophoresis meeting. Siena, Italy: Sept. 2002.

  17. Nadler T, Huang Y, Wagenfeld B, Parker B, Lotti R, Vella GJ, Binz PA, Müller M, Gras R, Hochstrasser DF, Bienvenut W, Sanchez JC, Corthals G, Appel RD. Proteome Analysis by Multi-Dimensional Liquid Chromatography Gel-Electrophoresis and the Molecular Scanner. 5th Siena 2D electrophoresis meeting. Siena, Italy: Sept. 2002.

  18. Tuloup M, Hoogland C, Binz PA, Appel RD. A new Peptide Mass Fingerprinting tool on ExPASy : ALDentE. Congress of the Swiss Proteomics Society. Lausanne: Dec. 2002: 93-96.

  19. Tuloup M, Hoogland C, Binz PA, Appel RD. Utilisation de la transformée de Hough dans le cadre de l’identification des protéines par spectrométrie de masse. JOBIM. 2002.

  20. Zangger N, Gras R, Appel RD. A Symmetric Cooperative Metaheuristic for Biological Sequence Clustering Using Local Entropy as Similarity Criterion. Second International Workshop on "AGENTS IN BIOINFORMATICS". Bologna, Italy: July 2002.

  21. Zangger N, Gras R, Appel RD. Biological Sequence Clustering by Cooperative Agents. Congress of the Swiss Proteomics Society. Lausanne: Dec. 2002: 75-80.

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