ScanProsite tool

Output format: Text

Hits for all PROSITE (release 2024_02) motifs on sequence USERSEQ1 :

found: 1 hit in 1 sequence

Graphical view (graphical view with feature detection)
shaded alignment of hits

Hits for Aminoacyl-transfer RNA synthetases class-II family profile:
   >PS50862|AA_TRNA_LIGASE_II (profile) Aminoacyl-transfer RNA synthetases class-II family profile:

>USERSEQ1  (585 aa)
MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDE
KNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT
APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAA
LRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKK
IVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING
YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAA
ACLMTEAPSFANPTALAELSIQVVK
      138 - 555:      score=20.671
        ------------------------------LKTRAKITSLVRRFMDDHGFLDIETPMLTK
        aT--------PEGARDYLVPSRvH---KGKFYALPQSPQLFKQL-----LMMSGFDRYYQ
        IVKCFRDE--DLRADRQPEFTQIDVETSFmtAPQVREVMEALVRHLWLEVKGvdLGdfpv
        mtfaeaerrygsdkpdlrnpmeltdvadlLKSVEFAVFAgpandpkgrvaalrvpggasl
        trkqideygnfvkiygakglayikvnerakgleginspvakflnaeiiedildrtaaqdg
        dmiffgadnkkivadamgalrlkvgkdlgltdeskwaplwvidfpmfeddgeggltamhh
        pftspkdmtaAELKAApeNAVAnAYDMVIN-----GYEVGGGSVRIHNGDmqqtvfgilg
        ineeeqrEKFG--FLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFP